Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_J23
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     27   0.18 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.95 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.95 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   5.1  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 140 SRYLLEVTCKALQILGQTYKCQIQSDRSTPALYEPYQPA 256
           S Y +  T    Q   QT + Q+  DR++P  Y  Y PA
Sbjct: 394 SLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPA 432


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 452 SAGSSCSDWQEDSTGTRSAKCS 517
           SAG+SC    E    TRSA C+
Sbjct: 26  SAGTSCKWLSEGGNDTRSADCT 47


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +2

Query: 371  DDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTGTRSAKCS 517
            +DGGCSS    S+  +   +++N Y     SS S +      +  + C+
Sbjct: 924  NDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSSFYSSFLYKSSESSCN 972


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 370 FGILYSLTSFVTVPTTTA 317
           FG +Y L ++  VPTTTA
Sbjct: 367 FGSIYFLGNYSLVPTTTA 384


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 385 AATVIFGILYSLTSFVTVPTTTAIKPS 305
           ++ VIFG+L+ L SF+   T T ++P+
Sbjct: 14  SSCVIFGVLFVLFSFLR--TRTKLQPT 38


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 385 AATVIFGILYSLTSFVTVPTTTAIKPS 305
           ++ VIFG+L+ L SF+   T T ++P+
Sbjct: 14  SSCVIFGVLFVLFSFLR--TRTKLQPT 38


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -3

Query: 280 AKRDTEIGGRLIRLIKSRRRTI 215
           AK+ T IGG+ + ++KS  +++
Sbjct: 889 AKKATNIGGKPVAVVKSSAQSL 910


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,434
Number of Sequences: 438
Number of extensions: 4295
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)