Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_J22
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    53   5e-08
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    37   0.004
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    31   0.22 
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    29   0.66 
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    28   2.0  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    26   6.1  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 53.2 bits (122), Expect = 5e-08
 Identities = 25/74 (33%), Positives = 46/74 (62%)
 Frame = +1

Query: 157 KAFDGFDHNRSGSIPCDFVADILRMMGQPFNKKILEELIEEVDADKSGRLEFPEFVTLAA 336
           +AF  FD ++ G+I  + +  ++R +GQ      L+++I EVDAD +G ++F EF+T+ A
Sbjct: 16  EAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMA 75

Query: 337 KFIVEEDAEAMQKE 378
           + + + D E   +E
Sbjct: 76  RKMKDTDNEEEVRE 89



 Score = 31.9 bits (69), Expect = 0.12
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 501 IQEIDTDGSGTVDFDEFM 554
           I E+D DG+GT+DF EF+
Sbjct: 54  INEVDADGNGTIDFTEFL 71



 Score = 29.1 bits (62), Expect = 0.87
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 389 AFRLYDKEGNGYIPTSSLARDPPGIG 466
           AF+++DK+GNGYI    L      +G
Sbjct: 90  AFKVFDKDGNGYITVEELTHVLTSLG 115



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 501 IQEIDTDGSGTVDFDEF 551
           I+E DTDG G ++++EF
Sbjct: 127 IREADTDGDGVINYEEF 143


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 16/58 (27%), Positives = 32/58 (55%)
 Frame = +1

Query: 157 KAFDGFDHNRSGSIPCDFVADILRMMGQPFNKKILEELIEEVDADKSGRLEFPEFVTL 330
           +AF+ FD + +G I    +  + + + +  + + LE +IEE D D+ G +   EF+ +
Sbjct: 114 RAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIEEFDLDQDGEINEQEFIAI 171



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +1

Query: 157 KAFDGFDHNRSGSIPCDFVADILRMMGQPFNKKILEELIEEVDADKSGRLEFPEFVTLAA 336
           +AF  FD ++  +I    +   +R +G    K  + +++ + D    G L+  +FV +  
Sbjct: 41  EAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVRVMT 100

Query: 337 KFIVEED 357
           + IVE D
Sbjct: 101 EKIVERD 107


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +1

Query: 163 FDGFDHNRSGSIPCDFVADILRMMGQPFNKKILEELIEEVDADKSGRLEFPEF 321
           ++  +  +S  +    V  + +M+    + + LEE  ++ DAD SG+L F EF
Sbjct: 303 WEKLEKEQSAQLDLGDVHRMCQMLHLNASMEFLEETFQKADADHSGKLSFEEF 355


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +1

Query: 157 KAFDGFDHNRSGSIPCDFVADILRMMGQPFNKKILEELIEEVDADKSGRLEFPEFV 324
           +AF  FD + +G IP   + D+LR  GQ  N  + E  I E+++     ++  +F+
Sbjct: 10  QAFSLFDRHGTGRIPKTSIGDLLRACGQ--NPTLAE--ITEIESTLPAEVDMEQFL 61


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 389 AFRLYDKEGNGYIPTSSLA 445
           AFR++DK+ +GYI T+  A
Sbjct: 83  AFRVFDKDNSGYIETAKFA 101


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 483 RQSAARPIPGGSRARLDVGM*PLPSLSYNLNA 388
           RQS   P+P G+ A +  G   + S SYN  A
Sbjct: 598 RQSIGDPLPPGAMANVSAGPSSVRSSSYNSTA 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,977
Number of Sequences: 5004
Number of extensions: 42582
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)