Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_J21
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   1.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.6  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 213 VKLYSTGTCGADVIDKPIVIG--HXGAGTVVKVGDKVSSL 326
           ++L  T TC A ++D+PI +      AGTVV +   ++ L
Sbjct: 389 LRLIPTTTCIARILDEPIELSGYRLTAGTVVLLHTWIAGL 428


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 466 SNGIGFPERPI 434
           SNG+ FP+RPI
Sbjct: 302 SNGLPFPQRPI 312


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 466 SNGIGFPERPI 434
           SNG+ FP+RPI
Sbjct: 302 SNGLPFPQRPI 312


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 141 IPVPEINDDEVL 176
           +PVP++ND  +L
Sbjct: 796 VPVPQVNDSTIL 807


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,098
Number of Sequences: 438
Number of extensions: 4436
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)