Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_J20
(873 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 40 0.003
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 40 0.003
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 40 0.003
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 31 1.1
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 31 1.1
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 5.7
AC017117-2|AAF16617.1| 295|Caenorhabditis elegans Hypothetical ... 29 5.7
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 7.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 7.6
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/56 (37%), Positives = 21/56 (37%)
Frame = +3
Query: 633 PXPGPXXPPXXRGPXXXPXXAXXPXXXPXXXGXVPXXPPXXXXXFXXGGPRPXPPP 800
P P P PP GP P P P G P PP GGP P PPP
Sbjct: 713 PPPPPGLPPITGGPPPPPP----PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
Score = 37.1 bits (82), Expect = 0.016
Identities = 19/53 (35%), Positives = 20/53 (37%)
Frame = +3
Query: 642 GPXXPPXXRGPXXXPXXAXXPXXXPXXXGXVPXXPPXXXXXFXXGGPRPXPPP 800
GP PP P P + P P G P PP GGP P PPP
Sbjct: 741 GPPPPPP---PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +2
Query: 641 GPXXPPXXXXXXXXPXXXPAXPPXPPXXGXXXXXPPXKXXXLLXGGAXXXPP 796
GP PP P P PP G PP + GG PP
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/56 (37%), Positives = 21/56 (37%)
Frame = +3
Query: 633 PXPGPXXPPXXRGPXXXPXXAXXPXXXPXXXGXVPXXPPXXXXXFXXGGPRPXPPP 800
P P P PP GP P P P G P PP GGP P PPP
Sbjct: 713 PPPPPGLPPITGGPPPPPP----PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
Score = 37.1 bits (82), Expect = 0.016
Identities = 19/53 (35%), Positives = 20/53 (37%)
Frame = +3
Query: 642 GPXXPPXXRGPXXXPXXAXXPXXXPXXXGXVPXXPPXXXXXFXXGGPRPXPPP 800
GP PP P P + P P G P PP GGP P PPP
Sbjct: 741 GPPPPPP---PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +2
Query: 641 GPXXPPXXXXXXXXPXXXPAXPPXPPXXGXXXXXPPXKXXXLLXGGAXXXPP 796
GP PP P P PP G PP + GG PP
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/56 (37%), Positives = 21/56 (37%)
Frame = +3
Query: 633 PXPGPXXPPXXRGPXXXPXXAXXPXXXPXXXGXVPXXPPXXXXXFXXGGPRPXPPP 800
P P P PP GP P P P G P PP GGP P PPP
Sbjct: 296 PPPPPGLPPITGGPPPPPP----PGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 347
Score = 37.1 bits (82), Expect = 0.016
Identities = 19/53 (35%), Positives = 20/53 (37%)
Frame = +3
Query: 642 GPXXPPXXRGPXXXPXXAXXPXXXPXXXGXVPXXPPXXXXXFXXGGPRPXPPP 800
GP PP P P + P P G P PP GGP P PPP
Sbjct: 324 GPPPPPP---PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +2
Query: 641 GPXXPPXXXXXXXXPXXXPAXPPXPPXXGXXXXXPPXKXXXLLXGGAXXXPP 796
GP PP P P PP G PP + GG PP
Sbjct: 295 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 346
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/54 (35%), Positives = 19/54 (35%)
Frame = -3
Query: 799 GGGXGRGPPXXKXXXFXGGXXGTXPXXXGXXXGXXAXXGXXXGPRXXGGXXGPG 638
GGG RGPP G G P G G G P GG GPG
Sbjct: 160 GGGDPRGPPGGMGGPPGHGGMG-GPPGHGGQGGPPGHGGMGGPPPGQGGPGGPG 212
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/54 (35%), Positives = 19/54 (35%)
Frame = -3
Query: 799 GGGXGRGPPXXKXXXFXGGXXGTXPXXXGXXXGXXAXXGXXXGPRXXGGXXGPG 638
GGG RGPP G G P G G G P GG GPG
Sbjct: 440 GGGDPRGPPGGMGGPPGHGGMG-GPPGHGGQGGPPGHGGMGGPPPGQGGPGGPG 492
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = -3
Query: 799 GGGXGRGPPXXKXXXFXGGXXGTXPXXXGXXXGXXAXXGXXXGPRXXGGXXGPGXG 632
GGG G PP GG G G G G G GG G G G
Sbjct: 67 GGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGG 122
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = -3
Query: 799 GGGXGRGPPXXKXXXFXGGXXGTXPXXXGXXXGXXAXXGXXXGPRXXGGXXGPGXG 632
GGG G PP GG G G G G G GG G G G
Sbjct: 67 GGGGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGG 122
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/57 (31%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Frame = +3
Query: 639 PGPXXPPXXRG----PXXXPXXAXXPXXXPXXXGXVPXXPPXXXXXFXXGGPRPXPP 797
P P PP G P P P G P PP GGP P PP
Sbjct: 501 PNPPPPPPLLGIAPMSTNAPPPPPMPGMAPLSTG-APTPPPPPPVGMANGGPPPPPP 556
>AC017117-2|AAF16617.1| 295|Caenorhabditis elegans Hypothetical
protein F43C11.7 protein.
Length = 295
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 306 KDIPEAVAEACGKCTPAQKHLFKRFLEVVKDKLPQEYEAFKTKYDPQGKHFDALLSAVA 482
K + + + E K +K + + + K L + E +K KYD +H+D + S+VA
Sbjct: 141 KKVRQNLLERQRKLQVNKKQVDDKIQALEKAALKKNDELYKEKYDEITRHYDRIRSSVA 199
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = +3
Query: 654 PPXXRG-PXXXPXXAXXPXXXPXXXGXVPXXPPXXXXXFXXGGPRPXPPPS 803
PP G P P A P G +P PP G P P PPPS
Sbjct: 77 PPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMF------GAPPPPPPPS 121
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = -3
Query: 802 EGGGXGRGPPXXKXXXFXGGXXGTXPXXXGXXXGXXAXXGXXXGPRXXGGXXGPG 638
+GGG GRG GG G+ G G G G GG GPG
Sbjct: 194 QGGGGGRGGNQGGEQGGWGGQGGSQGGSQGGSQGGWGNQGGQQG-GGRGGQQGPG 247
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/55 (30%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Frame = +3
Query: 639 PGPXXPPXX-RGPXXXPXXAXXPXXXPXXXGXVPXXPPXXXXXFXXGGPRPXPPP 800
P P PP P P P G P PP GG P PPP
Sbjct: 285 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 339
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/55 (30%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Frame = +3
Query: 639 PGPXXPPXX-RGPXXXPXXAXXPXXXPXXXGXVPXXPPXXXXXFXXGGPRPXPPP 800
P P PP P P P G P PP GG P PPP
Sbjct: 295 PRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP 349
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,271,955
Number of Sequences: 27780
Number of extensions: 305686
Number of successful extensions: 1310
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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