Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_J16
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 37 0.003
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 35 0.017
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 34 0.022
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.090
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.48
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 0.52
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 1.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 1.5
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.9
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 1.9
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 27 4.5
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 5.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.9
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/55 (34%), Positives = 19/55 (34%)
Frame = +3
Query: 687 PPPPXGGXXXXXXXXXXXXXXXXXPXPXPPPPPPPXXXXXXXPPPXXXPPPXPPP 851
PPPP P PPPPPP PP PPP PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP---PPPPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 34.7 bits (76), Expect = 0.017
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +3
Query: 759 PXPXPPPPPPPXXXXXXXPPPXXXPPPXPP 848
P PPPPPPP PP PPP PP
Sbjct: 5 PPGNPPPPPPP----PGFEPPSQPPPPPPP 30
Score = 30.3 bits (65), Expect = 0.36
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +3
Query: 765 PXPPPPPPPXXXXXXXPPPXXXPPPXPPP 851
P PPPPPP PP PP PPP
Sbjct: 6 PGNPPPPPP--------PPGFEPPSQPPP 26
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 815 PPXXXPPPPPPP 850
PP PPPPPPP
Sbjct: 5 PPGNPPPPPPPP 16
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 34.3 bits (75), Expect = 0.022
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Frame = +3
Query: 759 PXPXPPP---PPPPXXXXXXXPPPXXXPPPXP 845
P P PPP PPPP PP PPP P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 33.5 bits (73), Expect = 0.039
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +3
Query: 765 PXPPPPPPPXXXXXXXPPPXXXPPPXPPP 851
P PPPPP PP PP PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 765 PXPPPPPPPXXXXXXXPPPXXXPPPXPPP 851
P P PP PP P P PPP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPP 1711
Score = 25.8 bits (54), Expect = 7.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 814 PPLXXPPPPXPPP 852
PP+ PPPP PP
Sbjct: 1710 PPMSVPPPPSAPP 1722
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.090
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Frame = +3
Query: 771 PPPPPPPXXXXXXX---PPPXXXPPPXPPP 851
PPPPPPP PP PP PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 31.5 bits (68), Expect = 0.16
Identities = 16/55 (29%), Positives = 16/55 (29%)
Frame = +3
Query: 687 PPPPXGGXXXXXXXXXXXXXXXXXPXPXPPPPPPPXXXXXXXPPPXXXPPPXPPP 851
PPPP P PPPPP PP P PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/75 (24%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Frame = +2
Query: 422 PPPXGXPPLXXPPPXNXXGXQKXGFPNFXXXGGPXKXSXFXPPXX---KXXNXPLPXPXX 592
PPP P PP + P P + + PP + P+P P
Sbjct: 364 PPPRSAPSTGRQPPP-LSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPS 422
Query: 593 XXPXPPPXXPXXXXP 637
P PP P P
Sbjct: 423 LPPSAPPSLPPSAPP 437
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 765 PXPPPPPPPXXXXXXXPPPXXXPPPXPPP 851
P PP P PP PPP P P
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +3
Query: 759 PXPXPPPPPPPXXXXXXXPPPXXXPPPXPP 848
P P P PP PPP P P P
Sbjct: 458 PLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 765 PXPPPPPPPXXXXXXXPPPXXXPPPXPP 848
P PPP PPP PP P P P
Sbjct: 251 PAPPPIPPPSNGTVSSPP-NSPPRPIAP 277
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 6/33 (18%)
Frame = +3
Query: 771 PPPPPPPXXXXXXXPPPXXXP------PPXPPP 851
PPPPPP PP PP PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPP 393
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +3
Query: 759 PXPXPPPPPPPXXXXXXXPPPXXXPPPXPPP 851
P P P PP PP P PPP
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.48
Identities = 14/34 (41%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Frame = +3
Query: 759 PXPXPP---PPPPPXXXXXXXPPPXXXPPPXPPP 851
P P P PP PP P P PP PPP
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 29.1 bits (62), Expect = 0.84
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 759 PXPXPPPPPPPXXXXXXXPPPXXXPPPXPPP 851
P PP P P P P PP PPP
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194
Score = 27.9 bits (59), Expect = 1.9
Identities = 36/161 (22%), Positives = 39/161 (24%), Gaps = 9/161 (5%)
Frame = +3
Query: 396 PXIXGIXGFPPXXXXPPXXPPPPKXGXXXKKXGFXISXFXGXPKXSLFFXPLXXKXXTXX 575
P + G PP PP PK S PK S+ P+
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAP-SGAPPVPKPSVAAPPVPVPSGAPP 1141
Query: 576 -SLPXXXXXXXPXPXXXXPXXXPXXXXXXKXPRGGGXXP-PPPXGGXXXXXXXXXXXXXX 749
P P P P P G P P P G
Sbjct: 1142 VPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201
Query: 750 XXX----PXPXP---PPPPPPXXXXXXXPPPXXXPPPXPPP 851
P P P PP P P P P PP P P
Sbjct: 1202 KPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = +3
Query: 759 PXPXPPPPPPPXXXXXXXPPPXXXPPPXPPP 851
P P PP P P P PP P P
Sbjct: 1077 PAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/45 (28%), Positives = 13/45 (28%)
Frame = +1
Query: 718 PPPPPTTKXXXXXXXXXXXXXXXXXXXXXXXXPPLXXPPPPXPPP 852
PPPP K P PPPP PPP
Sbjct: 909 PPPPLPVKTSLNTFSHPDSVNIVANDTSVAGVMPAFPPPPPPPPP 953
Score = 26.2 bits (55), Expect(2) = 0.52
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 765 PXPPPPPPP 791
P PPPPPPP
Sbjct: 945 PPPPPPPPP 953
Score = 21.8 bits (44), Expect(2) = 0.52
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 759 PXPXPPPPPP 788
P P PPPP P
Sbjct: 905 PTPPPPPPLP 914
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 28.7 bits (61), Expect = 1.1
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3
Query: 759 PXPXPPPPPPP 791
P P PPPPPPP
Sbjct: 234 PLPAPPPPPPP 244
Score = 26.2 bits (55), Expect = 5.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 765 PXPPPPPPP 791
P PPPPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Frame = +3
Query: 771 PPP---PPPPXXXXXXXPPPXXXPPPXPPP 851
PPP PP P PPP PPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPP 196
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Frame = +3
Query: 774 PPPPPPXXXXXXXPP---PXXXPPPXPPP 851
PPPPPP PP P PP PP
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPP 1910
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Frame = +3
Query: 771 PPPPPP---PXXXXXXXPPPXXXPPPXPP 848
PPPPPP P P PP PP
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPP 1910
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = -3
Query: 850 GGGXGGGXXXGGGXXXXXXXGGGGGGGXGXG 758
GGG GG GG GGG GG G G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = -3
Query: 847 GGXGGGXXXGGGXXXXXXXGGGG-GGGXG 764
GG GGG GG G GG GGG G
Sbjct: 238 GGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 850 GGGXGGGXXXGGGXXXXXXXGGGGGGGXG 764
GG GG GGG GG GGG G
Sbjct: 231 GGFEGGPGGFGGGPGGFGGGLGGFGGGPG 259
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 850 GGGXGGGXXXGGGXXXXXXXGGGGGGGXG 764
GGG GG GG GGG GG G
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -3
Query: 850 GGGXGGGXXXGGGXXXXXXXGG-GGGGGXGXG 758
GGG GG GG GG GGG G G G
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRG 477
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 850 GGGXGGGXXXGGGXXXXXXXGGGGGGGXG 764
GGG GG GG GG GG G
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGGRG 65
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 5.9
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 765 PXPPPPPPP 791
P PPPPPPP
Sbjct: 306 PPPPPPPPP 314
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Frame = +3
Query: 759 PXPXPPPPPP---PXXXXXXXPPPXXXPPPXPP 848
P P PPP P P P P PPP P
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,397
Number of Sequences: 5004
Number of extensions: 42103
Number of successful extensions: 553
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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