Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_J16
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.095
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.51 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.6  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   8.2  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   8.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 0.095
 Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
 Frame = +3

Query: 759 PXPXPPPPPPPXXXXXXXPP-PXXXPPPXPPP 851
           P P P P   P       PP P   PPP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 759 PXPXPPPPPP 788
           P P PPPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 25.4 bits (53), Expect = 0.67
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 815 PPXXXPPPPPP 847
           PP   PPPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.0 bits (47), Expect = 3.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 765 PXPPPPPPP 791
           P P PPPPP
Sbjct: 339 PKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 759 PXPXPPPPPPP 791
           P    PPPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 812 PPPXXXPPPPP 844
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 818 PXXXPPPPPPP 850
           P    PPPPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 771  PPPPPPP 791
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 830  PPPPPPP 850
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 771  PPPPPPP 791
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 830  PPPPPPP 850
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 765  PXPPPPPP 788
            P PPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 441  PPXXPPPPKXG 473
            PP  PPPP  G
Sbjct: 1355 PPPPPPPPSSG 1365


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 765  PXPPPPPP 788
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = -3

Query: 850 GGGXGGGXXXGGGXXXXXXXGGGGGGGXGXG 758
           G    GG   G            GGGG G G
Sbjct: 23  GSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 97  CAVYCFCEIFRTTNDES 47
           C +YC  E F   +DE+
Sbjct: 72  CYMYCLLEAFSLVDDEA 88


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 97  CAVYCFCEIFRTTNDES 47
           C +YC  E F   +DE+
Sbjct: 72  CYMYCLLEAFSLVDDEA 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,238
Number of Sequences: 438
Number of extensions: 8565
Number of successful extensions: 61
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)