Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_J15
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    94   3e-20
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    94   3e-20
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce...    26   8.2  

>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 93.9 bits (223), Expect = 3e-20
 Identities = 41/72 (56%), Positives = 50/72 (69%)
 Frame = +2

Query: 167 PEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYXRSPVGVKTVTKIFGGRKRNGVTPS 346
           P+ +D+VKT   KELAPYDPDW+YVR AAI RHIY R  VGV  + K++GG    G+ PS
Sbjct: 31  PQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPS 90

Query: 347 HFCRSSGSIARK 382
           H    SGS+ RK
Sbjct: 91  HHRDGSGSVQRK 102


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 93.9 bits (223), Expect = 3e-20
 Identities = 41/72 (56%), Positives = 50/72 (69%)
 Frame = +2

Query: 167 PEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYXRSPVGVKTVTKIFGGRKRNGVTPS 346
           P+ +D+VKT   KELAPYDPDW+YVR AAI RHIY R  VGV  + K++GG    G+ PS
Sbjct: 31  PQWIDIVKTGTHKELAPYDPDWYYVRAAAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPS 90

Query: 347 HFCRSSGSIARK 382
           H    SGS+ RK
Sbjct: 91  HHRDGSGSVQRK 102


>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 126 SFNNLVXVQHPLL*RNASCLVLTTGRKQNLKNSL 25
           SF N   + HP L R +S  VL TG    L + L
Sbjct: 284 SFRNRQQISHPPLGRTSSSSVLPTGPASQLYDML 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,753
Number of Sequences: 5004
Number of extensions: 42353
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)