Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_J15
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...    89   4e-18
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...    89   4e-18
Z81472-1|CAB03889.1|  173|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   3.3  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen prot...    29   4.4  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 40/73 (54%), Positives = 49/73 (67%)
 Frame = +2

Query: 164 VPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYXRSPVGVKTVTKIFGGRKRNGVTP 343
           VPE  DLVK    KELAP DPDWFY R A++ RH+Y R P G+    K++GG KR GV P
Sbjct: 31  VPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAP 89

Query: 344 SHFCRSSGSIARK 382
           +HF  S+G+  RK
Sbjct: 90  NHFQTSAGNCLRK 102


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 40/73 (54%), Positives = 49/73 (67%)
 Frame = +2

Query: 164 VPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYXRSPVGVKTVTKIFGGRKRNGVTP 343
           VPE  DLVK    KELAP DPDWFY R A++ RH+Y R P G+    K++GG KR GV P
Sbjct: 31  VPEWSDLVKLGVNKELAPVDPDWFYTRAASLARHLYFR-PAGIGAFKKVYGGNKRRGVAP 89

Query: 344 SHFCRSSGSIARK 382
           +HF  S+G+  RK
Sbjct: 90  NHFQTSAGNCLRK 102


>Z81472-1|CAB03889.1|  173|Caenorhabditis elegans Hypothetical
           protein C16D6.1 protein.
          Length = 173

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 521 HQSLYFNFMLXPXPPXXPPXPPXXXXVPGPRXPP 622
           H +++FN      PP  PP P     +P P  PP
Sbjct: 60  HNTMWFNGGPPGPPPHGPPPPHLLHALPHPAYPP 93


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
 Frame = +2

Query: 554 PXPPXXPPXPPXXXXVPG--PR-XPPLXXGNWXP 646
           P PP   P PP     PG  PR  PP   G W P
Sbjct: 265 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPP 298


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
 Frame = +2

Query: 554 PXPPXXPPXPPXXXXVPG--PR-XPPLXXGNWXP 646
           P PP   P PP     PG  PR  PP   G W P
Sbjct: 275 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPP 308


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 554  PXPPXXPPXPPXXXXVPGPRXPP 622
            P PP  PP PP     P P  PP
Sbjct: 1338 PPPPPPPPPPPSDDLTPVPPPPP 1360


>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical protein
            F43C1.1 protein.
          Length = 1036

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 554  PXPPXXPPXPPXXXXVPGPRXPPL 625
            P PP  PP P      P P  PPL
Sbjct: 943  PSPPVPPPIPAIRHRTPSPPPPPL 966


>AC024811-5|AAF60775.1|  285|Caenorhabditis elegans Collagen protein
           48 protein.
          Length = 285

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +2

Query: 554 PXPPXXPPXPPXXXXVPGPRXPPLXXGNWXP 646
           P  P  PP PP     PG R PP   G   P
Sbjct: 174 PQGPSGPPGPPGQPGQPGQRGPPGEPGALLP 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,146,037
Number of Sequences: 27780
Number of extensions: 286840
Number of successful extensions: 1394
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)