Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_J12
         (964 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z81135-1|CAB03453.1|  627|Caenorhabditis elegans Hypothetical pr...    28   8.6  
U50310-5|AAA92541.1|  318|Caenorhabditis elegans Ground-like (gr...    28   8.6  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    28   8.6  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AY438643-1|AAR00670.1|  627|Caenorhabditis elegans abnormal DAue...    28   8.6  

>Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical
           protein Y48E1B.1 protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 740 PPIXPSPXXPPPPXPXXXXXTPQT 811
           PPI   P  PPPP P      PQT
Sbjct: 349 PPIISPPAPPPPPPPPPPPPPPQT 372


>Z81135-1|CAB03453.1|  627|Caenorhabditis elegans Hypothetical
           protein W01G7.1 protein.
          Length = 627

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 740 PPIXPSPXXPPPPXPXXXXXTP 805
           PP+ P P  PPPP P      P
Sbjct: 512 PPLPPLPPPPPPPKPKPAPVQP 533


>U50310-5|AAA92541.1|  318|Caenorhabditis elegans Ground-like (grd
           related) protein 9 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 740 PPIXPSPXXPPPPXP 784
           PP  PSP  PPPP P
Sbjct: 134 PPPPPSPPPPPPPPP 148


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 740 PPIXPSPXXPPPPXPXXXXXTPQTS 814
           PP  P P  PPPP P      P +S
Sbjct: 2   PPPPPPPPPPPPPPPPAASAPPPSS 26


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 740 PPIXPSPXXPPPPXPXXXXXTPQTS 814
           PP  P P  PPPP P      P +S
Sbjct: 2   PPPPPPPPPPPPPPPPAASAPPPSS 26


>AY438643-1|AAR00670.1|  627|Caenorhabditis elegans abnormal DAuer
           Formation DAF-5,a Ski oncogene homolog involved in a
           neuronal TGF betapathway (71.0 kD) (daf-5) protein.
          Length = 627

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 740 PPIXPSPXXPPPPXPXXXXXTP 805
           PP+ P P  PPPP P      P
Sbjct: 512 PPLPPLPPPPPPPKPKPAPVQP 533


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,439,607
Number of Sequences: 27780
Number of extensions: 52847
Number of successful extensions: 617
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2490012644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)