Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_J11
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23511-13|AAC46800.1|  770|Caenorhabditis elegans Hypothetical p...    29   3.5  
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern...    29   4.6  
Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical pr...    29   6.0  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    29   6.0  

>U23511-13|AAC46800.1|  770|Caenorhabditis elegans Hypothetical
           protein C32D5.11 protein.
          Length = 770

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 304 PAFPKSPSSFCPKVPKTLPPPICLSQVTSRGCRLEGC 194
           P  P SPS+      + L   ICLS   S+ CR+EGC
Sbjct: 50  PVIP-SPSTSSNNPVEELQCTICLSTRFSQECRIEGC 85


>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
           (werner's syndrome) relatedprotein 1 protein.
          Length = 1056

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -2

Query: 323 KDLSVVTSFSKESIIVLSQSAKDLASP-HLFVPSDVTRVSP*GLPPDRIIFCVIKRSVN 150
           K L   TSF ++++ +   S+KD+A    LF+ +D  +    G P   II+C  K+ V+
Sbjct: 404 KPLITTTSFDRKNLYISVHSSKDMAEDLGLFMKTDEVKGRHFGGP--TIIYCQTKQMVD 460


>Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical
           protein T13H5.2 protein.
          Length = 408

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 515 IRTPTFLPVVWSRXSSVTKDQTSDSXQRSAMIG-DHPXHLYNNL 643
           + TPTF+ V+WS  S     QT    Q+  ++G D   HL  N+
Sbjct: 213 VNTPTFIQVLWSMISPCLAKQTQ---QKVKILGNDWKQHLKENI 253


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = +3

Query: 243 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGG 407
           GGG   G  G   DG +G  G+         G + G  YG   +G GG    YGG
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGG 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,573,261
Number of Sequences: 27780
Number of extensions: 393731
Number of successful extensions: 1007
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)