Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_J10
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    32   0.61 
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    32   0.61 
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        29   3.2  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    29   3.2  
Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    29   4.3  
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     29   4.3  
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    29   4.3  
AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and bel...    28   7.5  
AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and bel...    28   7.5  
AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and bel...    28   7.5  
Z70287-2|CAA94298.2|  700|Caenorhabditis elegans Hypothetical pr...    28   9.9  
AF039050-3|AAC47936.2|  498|Caenorhabditis elegans Cytochrome p4...    28   9.9  

>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 25/84 (29%), Positives = 41/84 (48%)
 Frame = +3

Query: 177 KQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLX 356
           K KK+ S F +    +T D YY + + + + +    +TN   V+E +K Y     P +  
Sbjct: 51  KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99

Query: 357 FSVFYDKMRDEAIALFHLFYYAKD 428
           +S       +EAIA FH +Y  K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 25/84 (29%), Positives = 41/84 (48%)
 Frame = +3

Query: 177 KQKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLX 356
           K KK+ S F +    +T D YY + + + + +    +TN   V+E +K Y     P +  
Sbjct: 51  KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99

Query: 357 FSVFYDKMRDEAIALFHLFYYAKD 428
           +S       +EAIA FH +Y  K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 345 KNLXFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 479
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 345 KNLXFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 479
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536


>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 635 NEAILHLCYVNFLQHFHIHXHFRVYFIRSRNNETVAIRALDNSDVEGIQE 486
           N  I     V  L H HIH + + +F+  + N TV   A D S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 635 NEAILHLCYVNFLQHFHIHXHFRVYFIRSRNNETVAIRALDNSDVEGIQE 486
           N  I     V  L H HIH + + +F+  + N TV   A D S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 635 NEAILHLCYVNFLQHFHIHXHFRVYFIRSRNNETVAIRALDNSDVEGIQE 486
           N  I     V  L H HIH + + +F+  + N TV   A D S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform c protein.
          Length = 660

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 631 SLILKP--QLSMAFTKENDYFVYKANYSNAVLYXNEE 735
           +L+L P  +L++   KE   F YK+N   A+LY   E
Sbjct: 225 ALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 261


>AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform b protein.
          Length = 644

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 631 SLILKP--QLSMAFTKENDYFVYKANYSNAVLYXNEE 735
           +L+L P  +L++   KE   F YK+N   A+LY   E
Sbjct: 209 ALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 245


>AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform a protein.
          Length = 641

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 631 SLILKP--QLSMAFTKENDYFVYKANYSNAVLYXNEE 735
           +L+L P  +L++   KE   F YK+N   A+LY   E
Sbjct: 206 ALVLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 242


>Z70287-2|CAA94298.2|  700|Caenorhabditis elegans Hypothetical
           protein R09E10.3 protein.
          Length = 700

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 619 CKMASLILKPQLSMAFTKENDYFVYKANYSNAVLYXNEEKRLTYFTED 762
           C M  LI  P+L  +  K     + K +   +  Y N E   + FTED
Sbjct: 478 CAMIKLIDVPELGYSVDKNGGEVLVKGHNVTSGYYKNPEATASSFTED 525


>AF039050-3|AAC47936.2|  498|Caenorhabditis elegans Cytochrome p450
           family protein 34A6 protein.
          Length = 498

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 195 SFFQDVSQLNTDDEYYKIGKDYDIEMNMDNYTNKKAVEEF 314
           +F   +S ++TDDE +K  K+++ E  M+N   +K +  F
Sbjct: 397 AFATQLSAMHTDDETFKNHKEFNPERFMENNNLEKKLIPF 436


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,203,228
Number of Sequences: 27780
Number of extensions: 341500
Number of successful extensions: 856
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)