Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_J07
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 35 0.084
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 29 3.2
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 4.2
07_03_1160 - 24430240-24431268 29 5.5
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 28 7.3
01_06_1674 + 39072861-39073260,39073288-39073358,39073659-390737... 28 7.3
12_02_1174 - 26696869-26698191 28 9.7
12_01_0779 + 7129879-7130398,7130585-7130664 28 9.7
11_03_0097 + 9967351-9967969,9968180-9968259 28 9.7
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 34.7 bits (76), Expect = 0.084
Identities = 27/95 (28%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Frame = +3
Query: 510 P*XADKPAXSPK*TXPXXPPRKKNXKPXXXXSXKXSXPXXRGPXXPKXX---PXLGGPPK 680
P A +PA SP + P P R+ +P + + P P PK P PPK
Sbjct: 275 PAPAARPA-SPSPSLPLPPGRESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPK 333
Query: 681 KXXFPFLXXXPPKXXPXSPPKXXXXXXGPXKXXPP 785
P PP P P GP PP
Sbjct: 334 AAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPP 368
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/103 (23%), Positives = 29/103 (28%)
Frame = +3
Query: 474 PSTGLTKLGYXXP*XADKPAXSPK*TXPXXPPRKKNXKPXXXXSXKXSXPXXRGPXXPKX 653
P+T L + P +P T P PP P S P P P+
Sbjct: 29 PTTSPLPLAPAAAASSSNPNATPADTTPTSPPPASPPLPSATPPLAASPPPPPPPPPPRN 88
Query: 654 XPXLGGPPKKXXFPFLXXXPPKXXPXSPPKXXXXXXGPXKXXP 782
P PPK PP +PP P P
Sbjct: 89 SP---SPPKPPSQAAQSPLPPTTTTTTPPTAPVPAAAPPPTAP 128
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/71 (26%), Positives = 21/71 (29%)
Frame = +3
Query: 555 PXXPPRKKNXKPXXXXSXKXSXPXXRGPXXPKXXPXLGGPPKKXXFPFLXXXPPKXXPXS 734
P PP + P P + P P G PP PFL PP
Sbjct: 9 PHPPPPQGGFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPP-----PFLAPPPPPPPGPP 63
Query: 735 PPKXXXXXXGP 767
PP GP
Sbjct: 64 PPHQPQFNFGP 74
>07_03_1160 - 24430240-24431268
Length = 342
Score = 28.7 bits (61), Expect = 5.5
Identities = 23/81 (28%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Frame = +3
Query: 510 P*XADKPAXSPK*TXPXXPPRKKNXKPXXXXSXKXSXPXXRGPXXPKXXPXLGGPPK-KX 686
P P P P PP P P GP P P PP+ K
Sbjct: 55 PDVVPNPNQPPLQPTPGVPPLPNPDVPPMNKPDVPPMPKPDGPPIPPVQPCPDQPPQPKP 114
Query: 687 XFPFL--XXXPPKXXPXSPPK 743
P L PP+ P PPK
Sbjct: 115 DGPPLPNPNQPPQPNPNGPPK 135
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/77 (25%), Positives = 24/77 (31%)
Frame = +3
Query: 510 P*XADKPAXSPK*TXPXXPPRKKNXKPXXXXSXKXSXPXXRGPXXPKXXPXLGGPPKKXX 689
P + P P + P PP + P P P P P GPP +
Sbjct: 1140 PPLPEGPPPLPSDSPPCQPPLPPSPPPATPPPPPPLSPSL--PPPPPPPPLPSGPPPQPA 1197
Query: 690 FPFLXXXPPKXXPXSPP 740
P L PP P P
Sbjct: 1198 PPPLPIQPPPIPPPPVP 1214
>01_06_1674 +
39072861-39073260,39073288-39073358,39073659-39073716,
39074604-39074659,39075179-39075400
Length = 268
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 46 LSSDHLTELVGCLDNGSKIFHFDNPDLC 129
L+ + L EL GCLD G + + P+LC
Sbjct: 63 LTEEDLEELKGCLDLGFGFAYHEIPELC 90
>12_02_1174 - 26696869-26698191
Length = 440
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/77 (23%), Positives = 20/77 (25%)
Frame = +3
Query: 555 PXXPPRKKNXKPXXXXSXKXSXPXXRGPXXPKXXPXLGGPPKKXXFPFLXXXPPKXXPXS 734
P PP K P P P P P + P + PP P
Sbjct: 138 PHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTR 197
Query: 735 PPKXXXXXXGPXKXXPP 785
PP P PP
Sbjct: 198 PPSVKPPVVQPKPQPPP 214
>12_01_0779 + 7129879-7130398,7130585-7130664
Length = 199
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 46 LSSDHLTELVGCLDNGSKIFHFDNPDLC 129
L+ D L EL GC+D G + + P+LC
Sbjct: 99 LTDDDLEELKGCVDLGFGFSYDEIPELC 126
>11_03_0097 + 9967351-9967969,9968180-9968259
Length = 232
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 46 LSSDHLTELVGCLDNGSKIFHFDNPDLC 129
L+ D L EL GC+D G + + P+LC
Sbjct: 131 LTDDDLEELKGCVDLGFGFSYDEIPELC 158
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,706,673
Number of Sequences: 37544
Number of extensions: 360646
Number of successful extensions: 739
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -