Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_J06
(871 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 33 0.22
11_04_0009 - 12132781-12133272 30 2.1
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 29 4.8
07_01_0655 - 4910497-4911972,4912035-4912415 29 6.4
02_02_0272 - 8452994-8453187,8453850-8454975 29 6.4
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 8.5
09_02_0452 - 9498193-9498468 28 8.5
07_03_0723 + 20954827-20954905,20954974-20956277 28 8.5
07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166 28 8.5
06_01_0499 - 3581145-3582425 28 8.5
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 33.5 bits (73), Expect = 0.22
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -2
Query: 390 GMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMAL 274
G P R+SP L+ PAEAALS RSL S P ++
Sbjct: 138 GEEPPRRVSPAAVVLAVLLPAEAALSFIRSLSSLAPFSI 176
>11_04_0009 - 12132781-12133272
Length = 163
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 528 GGGVDYMFKQXVGASLSAAHSDVINRNDYSGGG*AE 635
G GVD M + V A+ S+A + D+SGGG E
Sbjct: 26 GEGVDGMAPEAVNATASSARLGAVASGDWSGGGGGE 61
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = +3
Query: 435 FHNNNHDLSAXAFAIRNS--PSALPNAPNFNTLGGGVDYMFKQXVGASLSAAHSDVINRN 608
FH + +S+ F+ +N PS LP++ + L ++ G L+ H RN
Sbjct: 620 FHGGENPISSDRFSYQNQRYPSQLPHSEDHRVLQNHAPSRYRSFPGEELATRHVSSSQRN 679
Query: 609 D 611
+
Sbjct: 680 N 680
>07_01_0655 - 4910497-4911972,4912035-4912415
Length = 618
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 490 GEFLIANALALRSWLLLWNKLTLPATPRLLPEAGNAGPGQTQPV 359
G F + LAL W+ L+++L +P RL G P Q V
Sbjct: 399 GSFTVFPMLALAVWIPLYDRLVVPWARRLTGREGGITPLQRMGV 442
>02_02_0272 - 8452994-8453187,8453850-8454975
Length = 439
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -2
Query: 375 VRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRG 244
+RL P P +L RA+ A + WR L +ADP L F + RG
Sbjct: 20 LRLPPRPSSLPRAA---AVCARWRRLVTADPAFLRRFRAHHRRG 60
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -2
Query: 378 PVRLSPCPFTLSRASPAEAA 319
P+RLSP P ++SR P+ AA
Sbjct: 153 PIRLSPSPRSMSRTRPSSAA 172
>09_02_0452 - 9498193-9498468
Length = 91
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -3
Query: 422 ACDAETAPRSRECGS 378
+C A TAPRSR CGS
Sbjct: 43 SCRATTAPRSRRCGS 57
>07_03_0723 + 20954827-20954905,20954974-20956277
Length = 460
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 405 CSPKPGMRVPVR-LSPCPFTLSRASPAEAALSLWR 304
CSP P R+P+R + C +ASP + + WR
Sbjct: 62 CSPAPSARIPLRGFTDCRL---KASPGSGSFTRWR 93
>07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166
Length = 545
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 220 SVRVHCEADGLSPRTCRHVST 158
S+R+HC A L+PR CR T
Sbjct: 401 SLRLHCPAPLLAPRKCRETCT 421
>06_01_0499 - 3581145-3582425
Length = 426
Score = 28.3 bits (60), Expect = 8.5
Identities = 22/73 (30%), Positives = 27/73 (36%)
Frame = -2
Query: 378 PVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRAAPEVPSEFTVK 199
PV SPCP ASP W + + P L + V F + P V + T
Sbjct: 236 PVADSPCPVRAGAASPCILGAIYWITTAAPTPGMLRFDVRREVFDDFPSPPCVHHDGTSP 295
Query: 198 LTACLRARVGTCL 160
TA L G L
Sbjct: 296 ATATLTELSGNKL 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,363,608
Number of Sequences: 37544
Number of extensions: 401661
Number of successful extensions: 1269
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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