Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_J06
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p...    29   4.3  
Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    29   5.7  
U23452-8|AAR12973.1|  231|Caenorhabditis elegans Hypothetical pr...    29   5.7  
U23452-7|AAR12972.1|  366|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AF003383-3|ABO16467.1|  438|Caenorhabditis elegans Cyclophylin p...    29   5.7  
AL023842-5|CAA19519.1|  393|Caenorhabditis elegans Hypothetical ...    28   7.5  
U50301-12|AAB37053.2|  486|Caenorhabditis elegans Hypothetical p...    28   10.0 

>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
           protein C06C3.1c protein.
          Length = 1124

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = +1

Query: 499 SPTRPTSTRWAAEWTTCSNRXWAH-R*ARRTLTSSTGMTTRAAGKLNLFRSPVQLARLQR 675
           SP++PT+  WA+ W   +N      R     L +++  +  +  +++ FRSP++      
Sbjct: 668 SPSQPTNVPWASLWHNVNNASTGQIRSHIEQLRNASFSSLSSYPRVSAFRSPIKTTASST 727

Query: 676 PASRSSIXLFTDLRGSPMLGSSFSKFF 756
             + +S  L       P + + + + F
Sbjct: 728 SVNSASSPLLLQPHPHPPVIAEYPRGF 754


>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
           protein C06C3.1c protein.
          Length = 1124

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = +1

Query: 499 SPTRPTSTRWAAEWTTCSNRXWAH-R*ARRTLTSSTGMTTRAAGKLNLFRSPVQLARLQR 675
           SP++PT+  WA+ W   +N      R     L +++  +  +  +++ FRSP++      
Sbjct: 668 SPSQPTNVPWASLWHNVNNASTGQIRSHIEQLRNASFSSLSSYPRVSAFRSPIKTTASST 727

Query: 676 PASRSSIXLFTDLRGSPMLGSSFSKFF 756
             + +S  L       P + + + + F
Sbjct: 728 SVNSASSPLLLQPHPHPPVIAEYPRGF 754


>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -2

Query: 399 PKPGMRVPVRLSPCPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRAAPEV 220
           P P    PV+ +P   T S A PA+ A  + +   SA P + S  +  P   T +A+ + 
Sbjct: 402 PAPQQAPPVQQNPPKPTPSPAPPAQKAQPVTQQQASAPPTSPSAPVQAPNTPTQKASSQD 461

Query: 219 P 217
           P
Sbjct: 462 P 462


>U23452-8|AAR12973.1|  231|Caenorhabditis elegans Hypothetical
           protein R07G3.7b protein.
          Length = 231

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 622 PPE*SFRLMTSECAALNDAPTFCLN 548
           PP     L +SEC   NDA  FC N
Sbjct: 65  PPRPKVTLKSSECLGHNDAGVFCFN 89


>U23452-7|AAR12972.1|  366|Caenorhabditis elegans Hypothetical
           protein R07G3.7a protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 622 PPE*SFRLMTSECAALNDAPTFCLN 548
           PP     L +SEC   NDA  FC N
Sbjct: 200 PPRPKVTLKSSECLGHNDAGVFCFN 224


>AF003383-3|ABO16467.1|  438|Caenorhabditis elegans Cyclophylin
           protein 17 protein.
          Length = 438

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 436 NKLTLPATPRLLPEAGNAGPGQTQPVPV 353
           ++LT  ATP  +P+  N+ PG+T+ + V
Sbjct: 37  SRLTPAATPNRVPQRANSSPGKTENLDV 64


>AL023842-5|CAA19519.1|  393|Caenorhabditis elegans Hypothetical
           protein Y44A6D.5 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 625 GKLNLFRSPVQLARLQRPASRSSIXLFTDLRGSPML 732
           GK+ LFR  + + R++R A RSS+  F D R + +L
Sbjct: 106 GKIRLFRPELNMERMRRSARRSSLPDF-DARQACLL 140


>U50301-12|AAB37053.2|  486|Caenorhabditis elegans Hypothetical
           protein F20D6.10 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 672 LKSSELDRRSEQVQLTRRPS 613
           LKSSE  R S++  +TRRPS
Sbjct: 399 LKSSESSRESQKTSVTRRPS 418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,576,233
Number of Sequences: 27780
Number of extensions: 297026
Number of successful extensions: 794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)