Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_J06
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   3.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   4.8  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   4.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.4  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 326 SAGLALDNVNGHGLSLTGTRIPG 394
           ++ LA+  +N H   + GTR+PG
Sbjct: 289 ASALAVVTLNLHHRGVRGTRVPG 311


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 496 ALGEFLIANALALRSWL 446
           ALGEF++   L LRS L
Sbjct: 276 ALGEFVVVKVLDLRSQL 292


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 417 AGXVNLFHNNNHDLSAXAFAIRNSPSALPNAPNFNTL 527
           +G +N+  +++HD S   +A  + P  + + PN + L
Sbjct: 68  SGQLNII-SSDHDDSDEEYAANSQPPRITSVPNTSRL 103


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 797  KGIYDFTALHNTF*KNFEKEDPNIGLPR 714
            +GIYD +  + +F  N  +     G+PR
Sbjct: 1271 EGIYDGSGANGSFLDNLIRSSLETGIPR 1298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,315
Number of Sequences: 438
Number of extensions: 4262
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)