Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_J04
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   3.4  
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...    27   3.4  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    27   3.4  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   6.0  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   6.0  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    26   7.9  
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    26   7.9  
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...    26   7.9  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 390 LKQITTSSTLKWKNFRKEFMN 452
           +K IT+SS  +W  FR+E  N
Sbjct: 1   MKPITSSSKRRWNRFRREMCN 21


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +3

Query: 186 LSKCTRAIYTSCVKFNILLVSFNFFLCLLQSIKMKNRSRQSGWWILL 326
           + + ++AI   C   N LLV  N    L ++I   N ++++GW +++
Sbjct: 328 VKRLSKAIELKCA--NALLVKINQIGSLSETIDAANMAKKAGWGLMV 372


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 390 LKQITTSSTLKWKNFRKEFMNNYVVGAESEEGPIYLCRARHE 515
           L QI T++TL+     + +  N  +  + E+  IYLCR  +E
Sbjct: 36  LGQIVTTNTLQEHGIPQVYWFNENIPNDIEKKTIYLCRPTYE 77


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 285 MKNRSRQSGWWILLVTMALIAPAASEAGVNLFNSRLKQITTSSTLK 422
           M+  + +S   IL  + ++++  AS +GVN  N  +KQ++  ST +
Sbjct: 1   MEGENSKSVHPILSHSTSVVSERASSSGVNGTNGGMKQVSPVSTAR 46


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -2

Query: 680 CYSPVXSCIKFKP-WDPIN 627
           CY  V +C+K KP W PI+
Sbjct: 232 CYLKVKACVKDKPEWQPIS 250


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 56  SALRRFSTHLPLRLTYFSSPRRLTHISANLLEKYFLKSVEKK 181
           SAL R +  +P+ LTY +    +  + ++   KY + +++ K
Sbjct: 151 SALSRVAKEIPILLTYMTEDPIVPSVLSSASAKYLINNLQLK 192


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 141 TYWKNIF*KVLKKKTLSKCTRAIYTSCVKFNILLVSFNFFLCLLQSIKMKNRSRQSG 311
           TY K ++ KV K+K  S     +  SC  F    V   F L  ++   +KN S+ +G
Sbjct: 88  TYSK-LWRKVFKRKDSSPALSILTGSCAGFTETFVVVPFELMKIRLQDVKNASKYNG 143


>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 762 HKRFFXCNANNRLKL 718
           HK F  CN NNR K+
Sbjct: 18  HKTFAFCNCNNRFKM 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,149,058
Number of Sequences: 5004
Number of extensions: 62109
Number of successful extensions: 197
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)