Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_J03
         (872 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL138925-3|CAI15452.1|  683|Homo sapiens collagen type XIII alph...    32   3.1  
AL138925-2|CAI15451.2|  695|Homo sapiens collagen type XIII alph...    32   3.1  
AL138925-1|CAI15450.1|  717|Homo sapiens collagen type XIII alph...    32   3.1  
AJ293624-1|CAC00688.1|  717|Homo sapiens type XIII collagen prot...    32   3.1  
AK023298-1|BAB14515.1|  172|Homo sapiens protein ( Homo sapiens ...    31   4.1  
AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein.             31   4.1  
AF043724-1|AAC39862.1|  359|Homo sapiens hepatitis A virus cellu...    31   5.5  

>AL138925-3|CAI15452.1|  683|Homo sapiens collagen type XIII alpha 1
           protein.
          Length = 683

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 16/49 (32%), Positives = 18/49 (36%)
 Frame = -3

Query: 849 GFPXSRXGPGAQGVQXXGESEXXPQXXNRLFPGGGADSXMQXKPSHPSP 703
           G P     PG  G+   G      Q   R FPG      +  KP HP P
Sbjct: 140 GMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGP 188


>AL138925-2|CAI15451.2|  695|Homo sapiens collagen type XIII alpha 1
           protein.
          Length = 695

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 16/49 (32%), Positives = 18/49 (36%)
 Frame = -3

Query: 849 GFPXSRXGPGAQGVQXXGESEXXPQXXNRLFPGGGADSXMQXKPSHPSP 703
           G P     PG  G+   G      Q   R FPG      +  KP HP P
Sbjct: 140 GMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGP 188


>AL138925-1|CAI15450.1|  717|Homo sapiens collagen type XIII alpha 1
           protein.
          Length = 717

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 16/49 (32%), Positives = 18/49 (36%)
 Frame = -3

Query: 849 GFPXSRXGPGAQGVQXXGESEXXPQXXNRLFPGGGADSXMQXKPSHPSP 703
           G P     PG  G+   G      Q   R FPG      +  KP HP P
Sbjct: 140 GMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGP 188


>AJ293624-1|CAC00688.1|  717|Homo sapiens type XIII collagen
           protein.
          Length = 717

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 16/49 (32%), Positives = 18/49 (36%)
 Frame = -3

Query: 849 GFPXSRXGPGAQGVQXXGESEXXPQXXNRLFPGGGADSXMQXKPSHPSP 703
           G P     PG  G+   G      Q   R FPG      +  KP HP P
Sbjct: 140 GMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGP 188


>AK023298-1|BAB14515.1|  172|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13236 fis, clone OVARC1000408. ).
          Length = 172

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 145 LKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKGRPYFKPTPFP 306
           LK T T L TT+R +L     T  + T T L+ ++ +  T+P       P  FP
Sbjct: 50  LKTTTTALKTTSRATLTTSVYTPTLGTLTPLNASMQMASTIPTEMMITTPYVFP 103


>AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein.
          Length = 6995

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +1

Query: 145  LKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKGRPYFKPTPFP 306
            LK T T L TT+R +L     T  + T T L+ ++ +  T+P       P  FP
Sbjct: 2185 LKTTTTALKTTSRATLTTSVYTPTLGTLTPLNASMQMASTIPTEMMITTPYVFP 2238


>AF043724-1|AAC39862.1|  359|Homo sapiens hepatitis A virus cellular
           receptor 1 protein.
          Length = 359

 Score = 31.1 bits (67), Expect = 5.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 154 TATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVP 270
           T    +TT RTS  +P TTT+  T    + ++  T TVP
Sbjct: 136 TTVPTVTTVRTSTTVPTTTTVPTTTVPTTMSIPTTTTVP 174


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,727,371
Number of Sequences: 237096
Number of extensions: 2553165
Number of successful extensions: 6210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6197
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11104084400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)