Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_J02
         (849 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    24   1.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   4.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   4.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   4.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   7.0  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 559 KCTYWRNSLSSNRRHWYHVHKI 624
           +  YWR  +  N  HW H H +
Sbjct: 193 RVAYWREDIGLNLHHW-HWHLV 213


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 235 SCIFIHDILIFKVQICDY-LFSGLQQERISHYFYVNNWGFN*IHI 104
           +C+  H + I    I +  L   +QQ  +SH F+++ + FN I I
Sbjct: 565 NCMCTHKVDIPLNAIVEIVLVDEVQQPNLSHPFHLHGYAFNVIGI 609


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 468 LMYTSEQSMVENIPPQTAKLPPTI 397
           + Y  E S  E+IPP    +PP +
Sbjct: 183 MYYRDECSFAESIPPYLFFVPPPL 206


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 468 LMYTSEQSMVENIPPQTAKLPPTI 397
           + Y  E S  E+IPP    +PP +
Sbjct: 416 MYYRDECSFAESIPPYLFFVPPPL 439



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 247 RAWFSCIFIHDILIFKVQICDYL 179
           + W  C++++ +L F++Q  D L
Sbjct: 668 KRWSQCMYMYFLLGFRLQANDEL 690


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 468 LMYTSEQSMVENIPPQTAKLPPTI 397
           + Y  E S  E+IPP    +PP +
Sbjct: 416 MYYRDECSFAESIPPYLFFVPPPL 439



 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 247 RAWFSCIFIHDILIFKVQICDYL 179
           + W  C++++ +L F++Q  D L
Sbjct: 668 KRWSQCMYMYFLLGFRLQANDEL 690


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 6/27 (22%)
 Frame = -3

Query: 580 NSSNKCTSCHCR------YTISCSQDT 518
           +S N CT+C C       +T+ C Q T
Sbjct: 688 SSDNPCTTCFCENGNNKCFTMECPQVT 714


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 235 SCIFIHDILIFKVQICDY-LFSGLQQERISHYFYVNNWGFN*IHI 104
           +C+  H + I    I +  L   +Q   +SH F+++ + FN + I
Sbjct: 565 NCMCTHQVDIPLNAIVEVVLVDEVQSPNLSHPFHLHGYAFNVVGI 609


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,933
Number of Sequences: 336
Number of extensions: 4594
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23451794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)