Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_I22
         (1474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   3.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   5.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   6.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    23   6.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 1   PPPPPXPXXXAGXXRGXPKXPLXXFQVGG 87
           PPPPP P   AG     P  P      GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = -2

Query: 453 APPPPPXPPXXXXXXXPPVXKXPXGXXXAXPXXXXP 346
           AP P P PP       PP    P G   A P    P
Sbjct: 745 APAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 450 PPPPPXPPXXXXXXXPPVXKXP 385
           PPPPP PP       PP    P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect(2) = 5.0
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 447 PPPPXPPXXXXXXXPPV 397
           PPPP PP       PP+
Sbjct: 311 PPPPPPPSRRNRGKPPI 327



 Score = 21.0 bits (42), Expect(2) = 5.0
 Identities = 13/50 (26%), Positives = 14/50 (28%)
 Frame = -2

Query: 585 PXXGAXXRPXXRPPXSVRXXGSPXXPXXXXXGXXXXXAXXSXXXAPPPPP 436
           P   A   P   PP +      P  P           A  S    P PPP
Sbjct: 246 PSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPP 295


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 450 PPPPPXPPXXXXXXXPPVXKXP 385
           PPPPP PP       PP    P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 23.4 bits (48), Expect(2) = 6.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 450 PPPPPXPPXXXXXXXPPV 397
           PPPPP P        PP+
Sbjct: 6   PPPPPAPAPAAAAPAPPL 23



 Score = 21.8 bits (44), Expect(2) = 6.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 453 APPPPPXPP 427
           APPPPP  P
Sbjct: 4   APPPPPPAP 12


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,529
Number of Sequences: 5004
Number of extensions: 12816
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 820620036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)