Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_I21
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    28   2.0  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    27   3.6  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    27   3.6  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   8.2  

>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/72 (23%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
 Frame = +2

Query: 200 FSTTVNEINYEAE-YYKVAQDFNIEGQQGL--LHKH-ESLRKFHDDVQGRIPSQEFGILD 367
           +S  ++E+   ++ + K++ D++++  + L  L  H E+LRK +DD+  +  S++  +L+
Sbjct: 90  WSKILDELTRSSKTHQKLSDDYSLDIAEKLKKLESHIEALRKVYDDLYKKFSSEKETLLN 149

Query: 368 LLRKNEGRSHRA 403
            +++ +   H A
Sbjct: 150 SVKRAKVSYHEA 161


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 618 NVVHXIFNFHVDKILRISFVWRQVER 541
           N+VH I  FH   I R++  WR +ER
Sbjct: 323 NLVHVIDGFHTRSIRRVA--WRPIER 346


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +2

Query: 218 EINYEAEYYKVAQDFNIEGQQGLLHKHESLRKFHDDVQGRI--PSQEFGILDLLRKN-EG 388
           E +++  + K+  DF+ +G +GLL  H  +     D  GRI   S +  I DL  K+ E 
Sbjct: 197 ECSFDPLFKKMCADFDEDGAKGLLMNHLCV-----DQHGRIVFDSSDTVIKDLENKDVEA 251

Query: 389 RSHRAVQA 412
            S  AV A
Sbjct: 252 ESQEAVVA 259


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 50  VRFYGSEHEDCLDFSGGFIALALSSTGT*N 139
           ++FY SE +DC D S  + A+A    G  N
Sbjct: 303 IQFYSSECDDCDDVSTAWYAMANRMRGKLN 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,081
Number of Sequences: 5004
Number of extensions: 53980
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)