Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_I17
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.9  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   8.8  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    22   8.8  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 435 DGGSYRSRRPL*NLRTASLTFFFLCW 358
           D    +SR+ +  + +A +  FF+CW
Sbjct: 258 DSRQIQSRKSVIKMLSAVVILFFICW 283


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 473  SGAALFARALAPQTV 429
            +GAA++AR +AP T+
Sbjct: 1268 TGAAVYARVIAPTTI 1282


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 420 RSRRPL*NLRTASLTFFFLCW 358
           +SR+ +  + +A +  FF+CW
Sbjct: 253 QSRKTITRMLSAVVITFFICW 273


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 290 GGGWIPSGYCSPRGYVHLPA 231
           GG   P GY   +G+VHL A
Sbjct: 77  GGLEEPKGYTLFKGFVHLGA 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,348
Number of Sequences: 438
Number of extensions: 3571
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)