Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_I16
         (1430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.17 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   2.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   3.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -2

Query: 466  AXPXTSXPTPPPXPPXXPXPPS 401
            A P  S PTPPP P   P PPS
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPS 1719


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
 Frame = -2

Query: 460 PXTSXPTPPPX---PPXXPXPPSPXXXLRXRXXXRP 362
           P    P PPP    PP  P PP P   ++ R    P
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 23/86 (26%), Positives = 24/86 (27%), Gaps = 1/86 (1%)
 Frame = -1

Query: 278 PXPGXXLXPPXXPPXXXXPXRP-PLPLHXXXLXXDXXXDRMXLXGXXAPXXLPXPPPXPX 102
           P  G    PP  PP    P    P               R+      A    P PPP P 
Sbjct: 259 PSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPS 318

Query: 101 PXNXVPPVXLNXWLGXPLPPXXXXPR 24
             N   P   N      LPP    PR
Sbjct: 319 RRNRGKPPIGNGSSNSSLPPPPPPPR 344



 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = -1

Query: 137 PXXLPXPPPXPXPXNXVPPVXLNXWLGXPLPPXXXXP 27
           P   P  PP P      PP+        PLPP    P
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,383,267
Number of Sequences: 5004
Number of extensions: 12401
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 796858378
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)