Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_I16
(1430 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 33 0.38
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 2.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 3.5
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 3.5
U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (gr... 30 4.6
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 30 4.6
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 30 4.6
AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical ... 30 4.6
AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical... 30 4.6
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 29 6.1
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 8.1
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 33.5 bits (73), Expect = 0.38
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 460 PXTSXPTPPPXPPXXPXPPSP 398
P S P PPP PP P PP P
Sbjct: 350 PIISPPAPPPPPPPPPPPPPP 370
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.1 bits (67), Expect = 2.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 460 PXTSXPTPPPXPPXXPXPPSP 398
P P PPP PP P PP P
Sbjct: 60 PMCPPPPPPPPPPMCPPPPPP 80
Score = 29.1 bits (62), Expect = 8.1
Identities = 17/62 (27%), Positives = 17/62 (27%)
Frame = -3
Query: 585 PHPXPXXPTXXXGNXPXXXPXPXXSXXXXLRILXXXXCXXPXPXPXXXXXPPXHPPXPXX 406
P P P P P P P C P P P PP PP P
Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPICPPQFCP--PPPMCPPPPPPPPPPMCPPPPPPMPSY 84
Query: 405 HP 400
P
Sbjct: 85 SP 86
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 3.5
Identities = 28/122 (22%), Positives = 31/122 (25%), Gaps = 8/122 (6%)
Frame = -3
Query: 465 PXPXPXXXXXPPXHPPXPXXHPPXXXYEXVXXHXXXXXXXPXRLXXP-----LRSPXRXX 301
P P P PP PP P P P R P + P
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS 323
Query: 300 SXGTPXXTXXXXLXXPXLXTPPXXXPPXP---PTXSPXXXTXPXXXXRPHXXXGXXXTPX 130
G P P + P PP P P+ P P P G P
Sbjct: 324 RFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPP 383
Query: 129 PP 124
PP
Sbjct: 384 PP 385
Score = 29.5 bits (63), Expect = 6.1
Identities = 19/66 (28%), Positives = 20/66 (30%)
Frame = -1
Query: 278 PXPGXXLXPPXXPPXXXXPXRPPLPLHXXXLXXDXXXDRMXLXGXXAPXXLPXPPPXPXP 99
P P PP PP RPP P G P +P PP P P
Sbjct: 266 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPG---PPGMPGMPPPPPP 322
Query: 98 XNXVPP 81
PP
Sbjct: 323 SRFGPP 328
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 3.5
Identities = 28/122 (22%), Positives = 31/122 (25%), Gaps = 8/122 (6%)
Frame = -3
Query: 465 PXPXPXXXXXPPXHPPXPXXHPPXXXYEXVXXHXXXXXXXPXRLXXP-----LRSPXRXX 301
P P P PP PP P P P R P + P
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS 333
Query: 300 SXGTPXXTXXXXLXXPXLXTPPXXXPPXP---PTXSPXXXTXPXXXXRPHXXXGXXXTPX 130
G P P + P PP P P+ P P P G P
Sbjct: 334 RFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPP 393
Query: 129 PP 124
PP
Sbjct: 394 PP 395
Score = 29.5 bits (63), Expect = 6.1
Identities = 19/66 (28%), Positives = 20/66 (30%)
Frame = -1
Query: 278 PXPGXXLXPPXXPPXXXXPXRPPLPLHXXXLXXDXXXDRMXLXGXXAPXXLPXPPPXPXP 99
P P PP PP RPP P G P +P PP P P
Sbjct: 276 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPG---PPGMPGMPPPPPP 332
Query: 98 XNXVPP 81
PP
Sbjct: 333 SRFGPP 338
>U50310-5|AAA92541.1| 318|Caenorhabditis elegans Ground-like (grd
related) protein 9 protein.
Length = 318
Score = 29.9 bits (64), Expect = 4.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 445 PTPPPXPPXXPXPPSP 398
P PPP PP P PP P
Sbjct: 134 PPPPPSPPPPPPPPPP 149
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 29.9 bits (64), Expect = 4.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 445 PTPPPXPPXXPXPPSP 398
P PPP PP P PP P
Sbjct: 2 PPPPPPPPPPPPPPPP 17
Score = 29.9 bits (64), Expect = 4.6
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -2
Query: 454 TSXPTPPPXPPXXPXPPSPXXXLRXRXXXRP 362
+S PTPPP PP P S R RP
Sbjct: 168 SSKPTPPPPPPAQQKPSSDREQFRTMRPLRP 198
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 29.9 bits (64), Expect = 4.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 445 PTPPPXPPXXPXPPSP 398
P PPP PP P PP P
Sbjct: 2 PPPPPPPPPPPPPPPP 17
>AL132860-5|CAB60515.1| 798|Caenorhabditis elegans Hypothetical
protein Y56A3A.6 protein.
Length = 798
Score = 29.9 bits (64), Expect = 4.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 460 PXTSXPTPPPXPPXXPXPPSP 398
P ++ P PPP PP PP P
Sbjct: 750 PSSTPPPPPPPPPLAAAPPQP 770
>AF003135-11|AAK18987.2| 1406|Caenorhabditis elegans Hypothetical
protein W03F11.4 protein.
Length = 1406
Score = 29.9 bits (64), Expect = 4.6
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 454 TSXPTPPPXPPXXPXPPS 401
T P PPP PP P PPS
Sbjct: 824 TLPPPPPPNPPPAPQPPS 841
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 29.5 bits (63), Expect = 6.1
Identities = 20/64 (31%), Positives = 20/64 (31%)
Frame = +1
Query: 100 GXGXGGGXGRXXGAXXPXXXMRSXXXSXXSXXXWRGSGGRXGXXXXGGXKGGXXXXPGXG 279
G G GGG G G W G GG G GG GG G G
Sbjct: 214 GSGGGGGGGGGGGYGSGGGWGGGGGGRDRDRGGWGGGGGGRGYGGGGGG-GGYGYGGGGG 272
Query: 280 XXRR 291
RR
Sbjct: 273 GRRR 276
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.1 bits (62), Expect = 8.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -2
Query: 460 PXTSXPTPPPXPPXXPXPP 404
P P PPP PP P PP
Sbjct: 127 PYQQQPPPPPPPPHYPPPP 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,511,387
Number of Sequences: 27780
Number of extensions: 153760
Number of successful extensions: 2423
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1897
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4079417776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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