Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_I15
         (1044 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ628418-1|CAF31522.1|  600|Homo sapiens keratin 3 protein.            35   0.43 
X05418-1|CAA28991.1|  215|Homo sapiens keratin type II (AA1-215)...    33   2.3  
BC003413-1|AAH03413.1|  217|Homo sapiens nucleolar protein famil...    31   9.2  
AY780787-1|AAV98357.1|  199|Homo sapiens nucleolar protein famil...    31   9.2  
AJ276003-1|CAB76563.1|  217|Homo sapiens GAR1 protein protein.         31   9.2  

>AJ628418-1|CAF31522.1|  600|Homo sapiens keratin 3 protein.
          Length = 600

 Score = 35.1 bits (77), Expect = 0.43
 Identities = 25/75 (33%), Positives = 26/75 (34%)
 Frame = -3

Query: 1042 GGXCFSXRRXGNGXGXRGVGXXLXXGEXGXGGXXXPEXXGPXKRFSGKGXXGGXXGXTGP 863
            GG   S    G G G  G G  +  G  G GG       G    F G G  GG  G  GP
Sbjct: 66   GGGFGSGYGGGFGGGFGG-GRGMGGGFGGAGGFGGAGGFGGAGGFGGPGGFGGSGGFGGP 124

Query: 862  SXXQIPXGRGXPAXP 818
                 P G G    P
Sbjct: 125  GSLGSPGGFGPGGFP 139


>X05418-1|CAA28991.1|  215|Homo sapiens keratin type II (AA1-215)
            protein.
          Length = 215

 Score = 32.7 bits (71), Expect = 2.3
 Identities = 23/68 (33%), Positives = 24/68 (35%)
 Frame = -3

Query: 1042 GGXCFSXRRXGNGXGXRGVGXXLXXGEXGXGGXXXPEXXGPXKRFSGKGXXGGXXGXTGP 863
            GG   S    G G G  G G  +  G  G GG       G    F G G  GG  G  GP
Sbjct: 94   GGGFGSGYGGGFGGGFGG-GRGMGGGFGGAGGFGGAGGFGGAGGFGGPGGFGGSGGFGGP 152

Query: 862  SXXQIPXG 839
                 P G
Sbjct: 153  GSLGSPGG 160


>BC003413-1|AAH03413.1|  217|Homo sapiens nucleolar protein family
           A, member 1 (H/ACA small nucleolar RNPs) protein.
          Length = 217

 Score = 30.7 bits (66), Expect = 9.2
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 468 IXXCKVNIEXVPYFNAPIFLE-KQRTNRQN*RGYLXNLXHYFVSXQIKEKMSKPXVSK 638
           +  C  +   VPYFNAP++LE K++  + +       L  ++ S ++ E M      K
Sbjct: 85  VCKCTTDENKVPYFNAPVYLENKEQIGKVD--EIFGQLRDFYFSVKLSENMKASSFKK 140


>AY780787-1|AAV98357.1|  199|Homo sapiens nucleolar protein family A
           member 1 protein.
          Length = 199

 Score = 30.7 bits (66), Expect = 9.2
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 468 IXXCKVNIEXVPYFNAPIFLE-KQRTNRQN*RGYLXNLXHYFVSXQIKEKMSKPXVSK 638
           +  C  +   VPYFNAP++LE K++  + +       L  ++ S ++ E M      K
Sbjct: 85  VCKCTTDENKVPYFNAPVYLENKEQIGKVD--EIFGQLRDFYFSVKLSENMKASSFKK 140


>AJ276003-1|CAB76563.1|  217|Homo sapiens GAR1 protein protein.
          Length = 217

 Score = 30.7 bits (66), Expect = 9.2
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 468 IXXCKVNIEXVPYFNAPIFLE-KQRTNRQN*RGYLXNLXHYFVSXQIKEKMSKPXVSK 638
           +  C  +   VPYFNAP++LE K++  + +       L  ++ S ++ E M      K
Sbjct: 85  VCKCTTDENKVPYFNAPVYLENKEQIGKVD--EIFGQLRDFYFSVKLSENMKASSFKK 140


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,336,882
Number of Sequences: 237096
Number of extensions: 2128053
Number of successful extensions: 5056
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4886
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 14152531456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)