Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_I15
         (1044 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical p...    31   1.8  
Z68009-4|CAA92006.1|  152|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    29   7.3  
AF036692-4|AAS47682.1|  318|Caenorhabditis elegans Serpentine re...    29   7.3  
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll...    28   9.6  

>U42841-13|AAC48170.1|  682|Caenorhabditis elegans Hypothetical
            protein T17H7.1 protein.
          Length = 682

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = -3

Query: 1030 FSXRRXGNGXGXRGV-GXXLXXGEXGXGGXXXPEXXGPXKRFSGKGXXGGXXGXTG 866
            F  RR   G G RG  G     G    GG       GP   FSG+   GG  G  G
Sbjct: 389  FPGRRGSGGPGGRGGRGQGPDFGPGRQGGRGQGPDFGPQDDFSGRRGSGGPGGRGG 444


>Z68009-4|CAA92006.1|  152|Caenorhabditis elegans Hypothetical
           protein R09A8.4 protein.
          Length = 152

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = -3

Query: 967 GEXGXGGXXX-PEXXGPXKRFSGKGXXGGXXGXTGPSXXQIPXGR-GXP 827
           GE G  G    P   GP K FSG     G  G  GP   Q P G+ G P
Sbjct: 73  GEKGPSGPPGLPGLVGP-KGFSGNSGPPGSPGEPGPEGEQGPAGKDGAP 120


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical protein
            E02A10.2 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 20/59 (33%), Positives = 20/59 (33%)
 Frame = -3

Query: 1042 GGXCFSXRRXGNGXGXRGVGXXLXXGEXGXGGXXXPEXXGPXKRFSGKGXXGGXXGXTG 866
            GG C      G G G  G G     G  G GG   P    P     G G  GG  G  G
Sbjct: 76   GGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPA---CGGGCGGGGGGCGG 131


>AF036692-4|AAS47682.1|  318|Caenorhabditis elegans Serpentine
           receptor, class x protein14 protein.
          Length = 318

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 562 PRQFCRFVLCFSRNIGALKYGTXSMF 485
           P++F  F++ F+RN+G L + T S F
Sbjct: 235 PKEFRLFLMIFARNLGFLIFATLSSF 260


>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
            protein.
          Length = 1795

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 17/61 (27%), Positives = 22/61 (36%)
 Frame = -3

Query: 1000 GXRGVGXXLXXGEXGXGGXXXPEXXGPXKRFSGKGXXGGXXGXTGPSXXQIPXGRGXPAX 821
            G  G+G     G+ G  G   P      + F+G G   G  G  G    +   G   PA 
Sbjct: 215  GNPGIGSIGPKGDPGDLGSVGPPGPPGPREFTGSGSIVGPRGNPGEKGDKGDIGAMGPAG 274

Query: 820  P 818
            P
Sbjct: 275  P 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,967,969
Number of Sequences: 27780
Number of extensions: 294145
Number of successful extensions: 594
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2772493070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)