Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_I15
         (1044 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.21 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   6.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.9  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 27.5 bits (58), Expect = 0.21
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 582 HYFVSXQIKEKMSKPXVSKXRAPNFFHLIPXXSLLTL 692
           H F+S +IK+ M    ++K   PN   LI    ++T+
Sbjct: 114 HKFISKKIKKTMENKDITKRPLPNESQLIKRHPIVTI 150


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 6.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 449 HNVRAGITASGGPAXLVRD 393
           HNV +G+T + G + LV D
Sbjct: 633 HNVASGLTKARGHSLLVAD 651


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 181 KRLINLXTPPKPN 143
           KR +++ TPP PN
Sbjct: 819 KRFLDITTPPTPN 831


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,749
Number of Sequences: 438
Number of extensions: 4080
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 34704288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)