Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_I14
         (1069 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.12 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.37 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.9  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +1

Query: 391 PSPPXPXGGXPPXXPPPXXPXG 456
           P PP P G  PP  PPP  P G
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPG 31



 Score = 31.5 bits (68), Expect = 0.21
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = +3

Query: 390 PLPPXPXGGXPPXXSPPXXPPG 455
           P PP P G  PP   PP  PPG
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPG 31



 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 390 PLPPXPXGGXPPXXSPPXXPP 452
           P PP P  G  P   PP  PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 392 PPPPXLXGAPPXXXPPPXP 448
           PPPP + GA P   PPP P
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 397 PPXPXGGXPPXXPPPXXPXGXG 462
           PP P  G PP  PPP    G G
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAG 774



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 392 PPPPXLXGAPPXXXPPPXPP 451
           PPP  + G PP   PPP PP
Sbjct: 752 PPPAPIMGGPP---PPPPPP 768


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 378  QXXXPLPPXPXGGXPPXXSPPXXPPG 455
            Q   P PP P    PP  S P  P G
Sbjct: 1701 QMSAPTPPPPPMSVPPPPSAPPMPAG 1726


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,231,720
Number of Sequences: 5004
Number of extensions: 13102
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 563206452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)