Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_I12
(861 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 210 3e-55
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 54 3e-08
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 36 0.010
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 28 2.0
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 26 6.0
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 7.9
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 26 7.9
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 26 7.9
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 210 bits (512), Expect = 3e-55
Identities = 105/159 (66%), Positives = 124/159 (77%)
Frame = +1
Query: 253 EISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLXGMALNL 432
E+ +ILEERI GA +A + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+ GMALNL
Sbjct: 35 EVPSILEERIRGAYNQAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNL 94
Query: 433 EPDNVGVVVFGNDKLIKEGDIVXRTGAIVDVPVGEQILGRVVDALGNPIDXKGPIDTKSR 612
E D VG V+FGND+L++EG++V RT IVDVPVGE +LGRVVDALGNPID KGPI T R
Sbjct: 95 EADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTER 154
Query: 613 MRVGIXAPGIXPRVSVREPMQTGIXAC*LFGYPLVRGXR 729
RV + APGI PR SV EPMQTG+ A P+ RG R
Sbjct: 155 RRVQLKAPGILPRTSVCEPMQTGLKAIDSM-VPIGRGQR 192
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 54.0 bits (124), Expect = 3e-08
Identities = 28/93 (30%), Positives = 48/93 (51%)
Frame = +1
Query: 451 VVVFGNDKLIKEGDIVXRTGAIVDVPVGEQILGRVVDALGNPIDXKGPIDTKSRMRVGIX 630
+ + G + L++ G V TG+ + +PVG LGR+++ +G P+D +GPI +
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHAD 166
Query: 631 APGIXPRVSVREPMQTGIXAC*LFGYPLVRGXR 729
AP + + E ++TGI L P RG +
Sbjct: 167 APSFEEQSTTPEILETGIKVVDLLA-PYARGGK 198
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 35.5 bits (78), Expect = 0.010
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +1
Query: 505 TGAIVDVPVGEQILGRVVDALGNPIDXKGPIDTKSRMRVGIXAPGIXP--RVSVREPMQT 678
TG + +PV E +LGRV + G PID KGP + + + I I P R+ E +QT
Sbjct: 92 TGHSMRIPVSEDMLGRVFNGSGLPID-KGP-NLLAEDYLDINGSPINPYARIYPEEMIQT 149
Query: 679 GI 684
GI
Sbjct: 150 GI 151
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.9 bits (59), Expect = 2.0
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -2
Query: 173 VAALGKRLATEPAIRAEISDIFHKLIIVADGKPVTPLATRCGSNLKEFP 27
VAAL K A +I+ S + I+ G T +A CG N K P
Sbjct: 3 VAALNKLSALSGSIQKSFSPKLISVGIIGSGNWGTAIAKICGENAKAHP 51
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 162 RQAPGYRASNTSGDQRHFSQTYNCGRRKASYSARDSLRVKS 40
+Q +++ DQ ++ YN R ++SARDS + K+
Sbjct: 378 QQYKAWKSQPKDRDQNQGNRAYNPPNRNQAFSARDSRQEKT 418
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -3
Query: 391 PSPQPGCSSSHKHERYHHQCSRH-DQSLLDQPWAR 290
P P G HK ++ CS H D S+ ++P A+
Sbjct: 405 PVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAK 439
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 690 GXDTSLHRLTHRHAGXDTWRLNTDPHTGFR 601
G SLH T H D R N+DP + R
Sbjct: 424 GVKRSLHDSTTSHNKSDLMRTNSDPQSAMR 453
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -1
Query: 705 PKESTGXDTSLHRLTHRHAGXDTWRLNTDPHTGFR 601
P E T D+ L H RL TD + GFR
Sbjct: 157 PAEHTRHDSKTLGLNHNQGAHIELRLRTDRYDGFR 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,923
Number of Sequences: 5004
Number of extensions: 60143
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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