Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_I12
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 40 0.003
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 36 0.055
12_01_0899 - 8689125-8689383,8689540-8689826 31 0.89
02_03_0049 + 14421408-14421942,14421988-14422842,14423847-144241... 31 1.2
07_01_1078 - 9707125-9707640,9708091-9708306,9708312-9709685,970... 31 1.6
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641... 30 2.7
04_04_0946 - 29579779-29580004,29580098-29580210 30 2.7
05_03_0313 + 12200743-12200955,12201238-12201622,12201997-122022... 29 3.6
02_04_0275 - 21469391-21470650 29 3.6
12_02_0305 - 17235832-17236379,17237345-17237444 29 4.8
12_02_0396 + 18577574-18578056,18578094-18578723 29 6.3
07_01_0711 + 5374717-5374992,5375022-5375277,5375317-5375384,537... 29 6.3
05_03_0577 + 15671570-15672432,15672571-15672785,15672825-156729... 28 8.3
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +1
Query: 415 GMALNLEPDNVGVVVF-GNDKLIKEGDIVXRTGAIVDVPVGEQILGRVVDALGNPIDXKG 591
G L ++ + V VF G + + V TG ++ PV +LGR+ + G PID
Sbjct: 98 GQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGP 157
Query: 592 PIDTKSRMRVGIXAPGIXPRVSVREPMQTGI 684
PI ++ + + + R E +QTGI
Sbjct: 158 PILPEAYLDISGSSINPSERTYPEEMIQTGI 188
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 35.5 bits (78), Expect = 0.055
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 415 GMALNLEPDNVGVVVF-GNDKLIKEGDIVXRTGAIVDVPVGEQILGRVVDALGNPIDXKG 591
G L ++ + V VF G + + V TG ++ PV +LGRV + G PID
Sbjct: 58 GQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGP 117
Query: 592 PI 597
PI
Sbjct: 118 PI 119
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 31.5 bits (68), Expect = 0.89
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 173 PRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKRGSLEPRPRL 304
P C R P+ PW +A +PP PP+ G+ RP L
Sbjct: 38 PPCARLLLPEPPWGMAALPPEPPWGAAAHPPAPHWGAGPSRPAL 81
>02_03_0049 +
14421408-14421942,14421988-14422842,14423847-14424151,
14424469-14424984
Length = 736
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 170 LPRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKR 277
+PR + WR P LA + QP K P S P SK+
Sbjct: 412 MPRNRYWRTPVKSPVLAKKLEQPAQKRPSSAPKSKK 447
>07_01_1078 -
9707125-9707640,9708091-9708306,9708312-9709685,
9709704-9710044,9710120-9710198
Length = 841
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 170 LPRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKRG 280
+P+ + WR P + + QP K P SPP SK+G
Sbjct: 635 MPKNRYWRTPVKSPVPSMKLEQPAQKKPSSPPKSKKG 671
>08_01_0722 +
6412654-6412860,6413142-6413687,6413745-6413877,
6413917-6414035,6414128-6414883,6415209-6415258,
6415560-6416679
Length = 976
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 170 LPRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKRGSLEP 292
+PR + WR P P A + Q K P SPP K+ + P
Sbjct: 552 MPRNRYWRLPVKPPIPAKKLEQLAQKKPPSPPKPKKPKVGP 592
>04_04_0946 - 29579779-29580004,29580098-29580210
Length = 112
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 361 HKHERYHHQCSRHDQSLLDQPWARLQGSSLR 269
H H R+HHQ + ++ PW +G +LR
Sbjct: 81 HHHHRHHHQQPQPRPAIDANPWGTARGPALR 111
>05_03_0313 +
12200743-12200955,12201238-12201622,12201997-12202274,
12202359-12202976
Length = 497
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 170 LPRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKR 277
+P+ + W+ P P LA + QP K P S P K+
Sbjct: 440 MPKNRYWKMPVEPPILAKKLEQPAQKKPPSAPKPKK 475
>02_04_0275 - 21469391-21470650
Length = 419
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3
Query: 403 RRTPPSPQPGCSSSHKHERYHHQCSRHDQSLLDQP 299
RRT + G SS+H H RY Q SRH + QP
Sbjct: 347 RRTAMATDVGTSSNH-HVRYRFQDSRHCHAAPQQP 380
>12_02_0305 - 17235832-17236379,17237345-17237444
Length = 215
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 230 SQPPTKLPRSPPSSKRGSLEPRPRLI 307
SQPPT P PP+ GS PR +I
Sbjct: 114 SQPPTIAPTQPPTPSGGSQCPRENVI 139
>12_02_0396 + 18577574-18578056,18578094-18578723
Length = 370
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 170 LPRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKR 277
+PR + WR P P A + QP + P S P K+
Sbjct: 313 MPRNRYWRTPVKPSTPAKKLEQPAQRKPPSAPKPKK 348
>07_01_0711 +
5374717-5374992,5375022-5375277,5375317-5375384,
5375556-5376287,5377013-5377270
Length = 529
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 170 LPRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKRGS 283
+PR + W+ P A + QP + P S P K+GS
Sbjct: 409 MPRNRYWKTPVKSSTPAKKLEQPAQRKPSSAPKPKKGS 446
>05_03_0577 +
15671570-15672432,15672571-15672785,15672825-15672954,
15672990-15673794,15674505-15674715,15674829-15675436
Length = 943
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 167 LLPRCQRWRCPQWPWHLANYMSQPPTKLPRSPPSSKRGS 283
++PR + W+ P P A + Q K P S P ++GS
Sbjct: 635 MMPRNRYWKTPVKPPIPAKKLEQSAQKKPPSAPKPRKGS 673
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,279,015
Number of Sequences: 37544
Number of extensions: 481983
Number of successful extensions: 1576
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1570
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -