Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_I12
(861 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 229 3e-60
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 229 3e-60
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 116 2e-38
AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical ... 123 1e-28
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 52 5e-07
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 44 2e-04
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 35 0.065
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 34 0.15
AL021566-5|CAA16500.1| 212|Caenorhabditis elegans Hypothetical ... 31 0.80
Z92972-5|CAB07484.1| 212|Caenorhabditis elegans Hypothetical pr... 31 1.4
U64858-4|AAB18282.2| 151|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z83125-7|CAB05619.1| 407|Caenorhabditis elegans Hypothetical pr... 30 2.4
AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical ... 30 2.4
AC006637-1|AAK85476.2| 342|Caenorhabditis elegans Hypothetical ... 29 3.2
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z75527-3|CAA99777.1| 428|Caenorhabditis elegans Hypothetical pr... 28 7.4
L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family ... 28 7.4
L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family ... 28 7.4
L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family ... 28 7.4
Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical p... 28 9.8
U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical pr... 28 9.8
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 28 9.8
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 28 9.8
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 28 9.8
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 28 9.8
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 28 9.8
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 28 9.8
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 229 bits (559), Expect = 3e-60
Identities = 115/160 (71%), Positives = 130/160 (81%)
Frame = +1
Query: 250 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLXGMALN 429
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+ GMA+N
Sbjct: 7 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMN 66
Query: 430 LEPDNVGVVVFGNDKLIKEGDIVXRTGAIVDVPVGEQILGRVVDALGNPIDXKGPIDTKS 609
L+ DNVGVVVFGNDK+I+EGDIV RTGAIVDVPVG+ +LGRVVDALGNPID KGPI
Sbjct: 67 LDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPIANAR 126
Query: 610 RMRVGIXAPGIXPRVSVREPMQTGIXAC*LFGYPLVRGXR 729
R RV + APGI PR+SVREPM TG+ A P+ RG R
Sbjct: 127 RSRVEVKAPGIIPRLSVREPMVTGVKAVDSL-VPIGRGQR 165
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 229 bits (559), Expect = 3e-60
Identities = 115/160 (71%), Positives = 130/160 (81%)
Frame = +1
Query: 250 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLXGMALN 429
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+ GMA+N
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMN 93
Query: 430 LEPDNVGVVVFGNDKLIKEGDIVXRTGAIVDVPVGEQILGRVVDALGNPIDXKGPIDTKS 609
L+ DNVGVVVFGNDK+I+EGDIV RTGAIVDVPVG+ +LGRVVDALGNPID KGPI
Sbjct: 94 LDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPIANAR 153
Query: 610 RMRVGIXAPGIXPRVSVREPMQTGIXAC*LFGYPLVRGXR 729
R RV + APGI PR+SVREPM TG+ A P+ RG R
Sbjct: 154 RSRVEVKAPGIIPRLSVREPMVTGVKAVDSL-VPIGRGQR 192
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 116 bits (278), Expect(2) = 2e-38
Identities = 56/73 (76%), Positives = 63/73 (86%)
Frame = +1
Query: 250 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLXGMALN 429
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+ GMA+N
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMN 93
Query: 430 LEPDNVGVVVFGN 468
L+ DNVGVVV GN
Sbjct: 94 LDVDNVGVVVLGN 106
Score = 62.1 bits (144), Expect(2) = 2e-38
Identities = 33/58 (56%), Positives = 37/58 (63%)
Frame = +1
Query: 556 VDALGNPIDXKGPIDTKSRMRVGIXAPGIXPRVSVREPMQTGIXAC*LFGYPLVRGXR 729
V LGNPID KGPI R RV + APGI PR+SVREPM TG+ A P+ RG R
Sbjct: 101 VVVLGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSL-VPIGRGQR 157
>AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical
protein H28O16.1b protein.
Length = 146
Score = 123 bits (297), Expect = 1e-28
Identities = 59/76 (77%), Positives = 67/76 (88%)
Frame = +1
Query: 250 AEISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLXGMALN 429
+E+S ILEERILG +LEETG+VLSIGDGIARVYGLKNIQAEEMVEF SG+ GMA+N
Sbjct: 34 SEVSKILEERILGTETGINLEETGKVLSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMN 93
Query: 430 LEPDNVGVVVFGNDKL 477
L+ DNVGVVVFGNDK+
Sbjct: 94 LDVDNVGVVVFGNDKI 109
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 52.0 bits (119), Expect = 5e-07
Identities = 29/93 (31%), Positives = 49/93 (52%)
Frame = +1
Query: 451 VVVFGNDKLIKEGDIVXRTGAIVDVPVGEQILGRVVDALGNPIDXKGPIDTKSRMRVGIX 630
+ + G + L++ G V TG + +PVG + LGR+++ +G PID +GPI +K+ +
Sbjct: 120 IAMDGTEGLVR-GQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAE 178
Query: 631 APGIXPRVSVREPMQTGIXAC*LFGYPLVRGXR 729
AP +E + TGI L P +G +
Sbjct: 179 APEFVEMSVEQEILVTGIKVVDLLA-PYAKGGK 210
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +1
Query: 415 GMALNLEPDNVGVVVF-GNDKLIKEGDIVXRTGAIVDVPVGEQILGRVVDALGNPIDXKG 591
G L + + V VF G + + I TG I+ PV E +LGR+ + G PID
Sbjct: 66 GQVLEISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGP 125
Query: 592 PIDTKSRMRVGIXAPGIXPRVSVREPMQTGIXA 690
P+ + + + R+ E +QTGI A
Sbjct: 126 PVLAEDFLDINGQPINPWSRIYPEEMIQTGISA 158
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 35.1 bits (77), Expect = 0.065
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 409 LXGMALNLEPDNVGVVVFGNDKLIKEGDIVXRTGAIVDVPVGEQILGRVVDALGNPI 579
L G + LE D + V+ + GD V RTG + V +G I+G + D + P+
Sbjct: 39 LVGEIIRLEGDYATIQVYEETSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPL 95
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 33.9 bits (74), Expect = 0.15
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +1
Query: 505 TGAIVDVPVGEQILGRVVDALGNPIDXKGPIDTKSRMRVGIXAPGIXPRVSVREPMQTGI 684
TG I PV +LGR+ + G PID P+ + + + R+ E +QTGI
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGI 168
Query: 685 XA 690
A
Sbjct: 169 SA 170
>AL021566-5|CAA16500.1| 212|Caenorhabditis elegans Hypothetical
protein F08E10.7 protein.
Length = 212
Score = 31.5 bits (68), Expect = 0.80
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -1
Query: 630 LNTDPHTGFRVDWSLGVNRVTQSIYYTPKDLLSNGNVYDSTSTLDN--ISFLDKLVITKY 457
+N D H + + NR+ Q +Y K + G +Y+S +D+ I++ +LVI KY
Sbjct: 117 INKDTHNALKSEEKATKNRLRQMLYSKSKSI---GCIYESCDKIDSKGINYNTRLVICKY 173
>Z92972-5|CAB07484.1| 212|Caenorhabditis elegans Hypothetical
protein T19C9.5 protein.
Length = 212
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -1
Query: 630 LNTDPHTGFRVDWSLGVNRVTQSIYYTPKDLLSNGNVYDSTSTLDN--ISFLDKLVITKY 457
+N D H + + NR+ Q +Y K + G +Y+S +D+ I++ +L+I KY
Sbjct: 117 INKDTHDALKSEAKAAKNRLRQMLYSKSKSI---GCIYESCDKIDSKGINYNTRLLICKY 173
>U64858-4|AAB18282.2| 151|Caenorhabditis elegans Hypothetical
protein C16D9.3 protein.
Length = 151
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 394 PPSPQPGCSSSHKHERYHHQCSRHDQSLLD 305
PP Q C ER H C R+DQS+++
Sbjct: 96 PPGSQLKCHFDKSRERLHANCYRYDQSVVN 125
>Z83125-7|CAB05619.1| 407|Caenorhabditis elegans Hypothetical
protein T15D6.9 protein.
Length = 407
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 394 PPSPQPGCSSSHKHERYHHQCSRHDQSLLD 305
PP Q C H +Y+ C R+DQS+++
Sbjct: 285 PPGSQSICIFLHDWNKYYADCFRYDQSIIN 314
>AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical
protein T24C4.2 protein.
Length = 423
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -2
Query: 428 LRAIPLRPEENSTISSAWMFFKP*TRAIPSPMLKTRPVSSRSALGAAPRILS 273
+R IPLRP +NS F++ + SP++ S LGAA R+L+
Sbjct: 352 VRPIPLRPSQNSA------FYQMLNSSSTSPIIAVTKAEVDSVLGAASRLLN 397
>AC006637-1|AAK85476.2| 342|Caenorhabditis elegans Hypothetical
protein F41B4.1 protein.
Length = 342
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 403 RRTPPSPQPGCSSSHKHERYHHQCSRHDQSLLDQ 302
R PP P P + SHK+E SR S L++
Sbjct: 54 RELPPPPPPRKTPSHKYEEMRRSLSRGPSSTLER 87
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -1
Query: 633 RLNTDPHTGFRVDWSLGVNRVTQSIYYTPKDLLSNGNVYDS---TSTLDN-ISFLDKLVI 466
R ++ P+ DW++ + + ++ +Y+T LL+ D T T +N F+ K V
Sbjct: 82 RTDSIPNANRHADWAIQIKKPSKYLYHTSFALLAAFAHRDQIIVTLTSENQFKFVFKTVY 141
Query: 465 TKYYHTH 445
+YY H
Sbjct: 142 CRYYDCH 148
>Z75527-3|CAA99777.1| 428|Caenorhabditis elegans Hypothetical
protein C15C8.3 protein.
Length = 428
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -1
Query: 438 RFQVKGHSXET*GELHHLLSLDVLQAINTSDTITNAQDTTSLF*ISLGRGSKD-PLFEDG 262
R KG E E + LLS LQ ++S + + +D + ISLG +++ LF D
Sbjct: 32 RMNAKGKLAEYEKERNELLSKKSLQLASSSSPVIDYEDMAYMVQISLGSPAQNFVLFIDS 91
Query: 261 GDLGSFV 241
G +V
Sbjct: 92 GSSNLWV 98
>L25598-4|AAV58888.1| 737|Caenorhabditis elegans Calpain family
protein 1, isoform b protein.
Length = 737
Score = 28.3 bits (60), Expect = 7.4
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 367 KNIQAEEMVEFSSG-LXGMALNLEPDNVGVVVFGNDKLIKEGDIVXRTGA-IVDVPVGEQ 540
+N+ M F G L G ++ +P NV N L+K G TG IVD P G+
Sbjct: 442 RNLMQMMMRGFEMGSLFGCSIEADP-NVWEAKMSNG-LVK-GHAYSITGCRIVDGPNGQT 498
Query: 541 ILGRVVDALGNPIDXKGPIDTKSR 612
+ R+ + GN + GP SR
Sbjct: 499 CILRIRNPWGNEQEWNGPWSDNSR 522
>L25598-3|AAM15551.1| 759|Caenorhabditis elegans Calpain family
protein 1, isoform d protein.
Length = 759
Score = 28.3 bits (60), Expect = 7.4
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 367 KNIQAEEMVEFSSG-LXGMALNLEPDNVGVVVFGNDKLIKEGDIVXRTGA-IVDVPVGEQ 540
+N+ M F G L G ++ +P NV N L+K G TG IVD P G+
Sbjct: 467 RNLMQMMMRGFEMGSLFGCSIEADP-NVWEAKMSNG-LVK-GHAYSITGCRIVDGPNGQT 523
Query: 541 ILGRVVDALGNPIDXKGPIDTKSR 612
+ R+ + GN + GP SR
Sbjct: 524 CILRIRNPWGNEQEWNGPWSDNSR 547
>L25598-2|AAV58887.1| 780|Caenorhabditis elegans Calpain family
protein 1, isoform a protein.
Length = 780
Score = 28.3 bits (60), Expect = 7.4
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 367 KNIQAEEMVEFSSG-LXGMALNLEPDNVGVVVFGNDKLIKEGDIVXRTGA-IVDVPVGEQ 540
+N+ M F G L G ++ +P NV N L+K G TG IVD P G+
Sbjct: 488 RNLMQMMMRGFEMGSLFGCSIEADP-NVWEAKMSNG-LVK-GHAYSITGCRIVDGPNGQT 544
Query: 541 ILGRVVDALGNPIDXKGPIDTKSR 612
+ R+ + GN + GP SR
Sbjct: 545 CILRIRNPWGNEQEWNGPWSDNSR 568
>Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 355 VYGLKNIQAEEMVEFSSGLXGMALNLEPDNVGVVVFGNDK-LIKEGDIVXRTGAIVDVPV 531
+ GL +Q+ + E G+ + +L + +DK LIK G I+ + I VP+
Sbjct: 631 IAGLPEMQSSWIQENRDGMKKLLDDLTKLDKYAKDHSSDKDLIKYGSILSKASEITGVPI 690
Query: 532 GEQILGR-VVDAL 567
++G+ VV AL
Sbjct: 691 DTSLIGKSVVPAL 703
>Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 355 VYGLKNIQAEEMVEFSSGLXGMALNLEPDNVGVVVFGNDK-LIKEGDIVXRTGAIVDVPV 531
+ GL +Q+ + E G+ + +L + +DK LIK G I+ + I VP+
Sbjct: 631 IAGLPEMQSSWIQENRDGMKKLLDDLTKLDKYAKDHSSDKDLIKYGSILSKASEITGVPI 690
Query: 532 GEQILGR-VVDAL 567
++G+ VV AL
Sbjct: 691 DTSLIGKSVVPAL 703
>U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical
protein R07E4.5 protein.
Length = 817
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Frame = -3
Query: 469 HYQILPHPHCQ-VPS*GPFX*DLRRTPPSPQPGCSSSHKHERYHHQCSRHDQ 317
H+ PHPH Q +P P P P G +SH H Q + H Q
Sbjct: 763 HHYTQPHPHHQQMPHHQPHLHHAHH-PVHPHRGPRASHSQHLQHGQYAHHTQ 813
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 323 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 147
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 453 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 512
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 323 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 147
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 323 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 147
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 323 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 147
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 323 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 147
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 453 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 512
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -2
Query: 323 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 147
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,567,636
Number of Sequences: 27780
Number of extensions: 362425
Number of successful extensions: 1130
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -