Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_I11
         (1091 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0686 - 30900748-30902167,30903442-30904742                       29   6.5  
12_02_1174 - 26696869-26698191                                         29   8.6  
11_01_0066 - 536281-537196,537397-537452                               29   8.6  

>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = +1

Query: 889  PTXAXXXRPSPGXXPPXAPAKTXXXXPXPXKPXPXXXRXPPAK 1017
            P  A    P P   PP  PAK     P P  P P     P  K
Sbjct: 331  PPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK 373


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 913  PSPGXXPPXAPAKTXXXXPXPXKPXPXXXRXPP 1011
            PSP   PP  P +T    P   +P P     PP
Sbjct: 219  PSPPPPPPTVPPRTPGDTPAVVEPKPQPPPPPP 251


>11_01_0066 - 536281-537196,537397-537452
          Length = 323

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 15/41 (36%), Positives = 15/41 (36%)
 Frame = +1

Query: 889  PTXAXXXRPSPGXXPPXAPAKTXXXXPXPXKPXPXXXRXPP 1011
            PT A   RP P   PP  P       P P  P P     PP
Sbjct: 201  PTIARPPRPLPPASPP--PPSIATPPPSPASPPPPSTATPP 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,786,654
Number of Sequences: 37544
Number of extensions: 187474
Number of successful extensions: 618
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3269614880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)