Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_I09
         (1099 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    25   1.0  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    24   2.4  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   4.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   4.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   4.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   4.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   4.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   4.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   4.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   7.2  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   9.5  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 292 SSTSSRASGPF*RGQIPET*NVHPFRAIFLRLEKCWPPVERKPDQP 155
           +ST+S AS  +   Q PE  +V P   +   + +C  P E KP +P
Sbjct: 207 ASTASSASN-YSPSQSPEPESVRPLSLV---VRRCEEPTEEKPWRP 248


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
            homeodomain protein protein.
          Length = 232

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 992  GAPPLXSPPXXXXXPXPPXXXXPG 1063
            GAPPL SP        PP    PG
Sbjct: 199  GAPPLVSPFLAAMAHRPPHFAFPG 222


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 298 PEKFHEFFGLTXRWGP 345
           PE F+EF+    RW P
Sbjct: 607 PEGFNEFYNQRRRWMP 622


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 298 PEKFHEFFGLTXRWGP 345
           PE F+EF+    RW P
Sbjct: 867 PEGFNEFYNQRRRWVP 882


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 298 PEKFHEFFGLTXRWGP 345
           PE F+EF+    RW P
Sbjct: 867 PEGFNEFYNQRRRWVP 882


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 298 PEKFHEFFGLTXRWGP 345
           PE F+EF+    RW P
Sbjct: 840 PEGFNEFYNQRRRWMP 855


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 298 PEKFHEFFGLTXRWGP 345
           PE F+EF+    RW P
Sbjct: 840 PEGFNEFYNQRRRWMP 855


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 298 PEKFHEFFGLTXRWGP 345
           PE F+EF+    RW P
Sbjct: 867 PEGFNEFYNQRRRWVP 882


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 298 PEKFHEFFGLTXRWGP 345
           PE F+EF+    RW P
Sbjct: 867 PEGFNEFYNQRRRWVP 882


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -2

Query: 186 GPRLNVNPTSLPTNQNQPNTKLKLFS 109
           GP   V+PT + + +    T   +FS
Sbjct: 420 GPAFKVDPTQVESEEEDEETSTTVFS 445


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/23 (34%), Positives = 9/23 (39%)
 Frame = +1

Query: 583 PXPTPTNPXPPXXXXXGPGXXXP 651
           P P P+ P PP       G   P
Sbjct: 205 PEPVPSTPYPPPGSLGSMGVSVP 227


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,916
Number of Sequences: 336
Number of extensions: 6093
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 31650779
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)