Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_I09
(1099 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.12
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 32 0.16
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.22
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.6
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb... 27 6.1
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 26 8.1
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 32.3 bits (70), Expect = 0.12
Identities = 22/68 (32%), Positives = 22/68 (32%)
Frame = +2
Query: 518 STXPXXNQPHQXKPXXXPTPPXXXQPPPTQXPPXXXXXGPGXXPXFGGGXXGPPXPKXXL 697
ST P Q PTPP PPP PP P P G PP P
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPP----PPPMSVPPP-----PSAPPMPAGPPSAPPPPLPAS 1738
Query: 698 XGPXAPTP 721
P P P
Sbjct: 1739 SAPSVPNP 1746
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 31.9 bits (69), Expect = 0.16
Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Frame = +3
Query: 522 LXPKXTNHTXXNPPPNXPPXXXPNPHQPXXPXXXPPGARGXXPXL--GGGXXGPPXXXXX 695
+ P +H P P P H P P PG P + G PP
Sbjct: 207 MPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHH 266
Query: 696 FXGXXPPPPP 725
G PPPP
Sbjct: 267 EPGEHMPPPP 276
Score = 31.9 bits (69), Expect = 0.16
Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Frame = +3
Query: 522 LXPKXTNHTXXNPPPNXPPXXXPNPHQPXXPXXXPPGARGXXPXL--GGGXXGPPXXXXX 695
+ P +H P P P H P P PG P + G PP
Sbjct: 233 MPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHH 292
Query: 696 FXGXXPPPPP 725
G PPPP
Sbjct: 293 EPGEHMPPPP 302
Score = 31.9 bits (69), Expect = 0.16
Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Frame = +3
Query: 522 LXPKXTNHTXXNPPPNXPPXXXPNPHQPXXPXXXPPGARGXXPXL--GGGXXGPPXXXXX 695
+ P +H P P P H P P PG P + G PP
Sbjct: 259 MPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHH 318
Query: 696 FXGXXPPPPP 725
G PPPP
Sbjct: 319 EPGEHMPPPP 328
Score = 28.7 bits (61), Expect = 1.5
Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Frame = +3
Query: 540 NHTXXNPPPNXPPXXXPNPHQPXXPXXXPPGARGXXPXL--GGGXXGPPXXXXXFXGXXP 713
+H + P P H P P PG P + G PP G
Sbjct: 187 HHEFDDEDREFPAHHEPGEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHM 246
Query: 714 PPPP 725
PPPP
Sbjct: 247 PPPP 250
Score = 26.6 bits (56), Expect = 6.1
Identities = 20/71 (28%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Frame = +2
Query: 542 PHQXKPXXXPTPPXXXQPPPTQXPPXXXXXGPGXX---PXFGG--GXXGPPXPKXXLXGP 706
P KP PP P PP PG P G PP P G
Sbjct: 211 PMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGE 270
Query: 707 XAPTPPXXRXP 739
P PP P
Sbjct: 271 HMPPPPMHHEP 281
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.22
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = +2
Query: 569 PTPPXXXQPPPTQXPPXXXXXGPGXXPXFGGGXXGPPXPKXXLXGPXAPTPP 724
P PP P P P P P GG PP P GP P PP
Sbjct: 734 PPPPAVIVPTPAPAPIPV----PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +3
Query: 555 NPPPNXPPXXXPNPHQPXXPXXXPPG 632
NPPP PP P QP P PPG
Sbjct: 8 NPPPPPPPPGFEPPSQP--PPPPPPG 31
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 3.5
Identities = 19/72 (26%), Positives = 21/72 (29%), Gaps = 2/72 (2%)
Frame = +2
Query: 512 VCSTXPXXNQPHQXKPXXXPTPPXXXQPPPTQXPPXXXXX--GPGXXPXFGGGXXGPPXP 685
V ST P P P + PPP P P P PP P
Sbjct: 1036 VPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVP 1095
Query: 686 KXXLXGPXAPTP 721
K + P P P
Sbjct: 1096 KPSVAAPPVPKP 1107
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/65 (26%), Positives = 20/65 (30%)
Frame = +2
Query: 527 PXXNQPHQXKPXXXPTPPXXXQPPPTQXPPXXXXXGPGXXPXFGGGXXGPPXPKXXLXGP 706
P P + P P+ PPP+ PP G P PP P P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPP-VPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247
Query: 707 XAPTP 721
TP
Sbjct: 1248 SVSTP 1252
Score = 26.2 bits (55), Expect = 8.1
Identities = 16/60 (26%), Positives = 19/60 (31%)
Frame = +2
Query: 542 PHQXKPXXXPTPPXXXQPPPTQXPPXXXXXGPGXXPXFGGGXXGPPXPKXXLXGPXAPTP 721
P P P+ P P+ PP G P PP PK + P P P
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPK--PSVAAPPVPKPSVAVPPVPAP 1117
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 4.6
Identities = 21/69 (30%), Positives = 21/69 (30%), Gaps = 8/69 (11%)
Frame = +2
Query: 569 PTPPXXXQ--PP--PTQXPPXXXXXGPGXXPXFGGGXXGPPXPKXXLXG----PXAPTPP 724
PTPP PP P PP P P PP P P AP PP
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Query: 725 XXRXPXXXA 751
P A
Sbjct: 478 PAPAPAPAA 486
Score = 26.2 bits (55), Expect = 8.1
Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Frame = +3
Query: 528 PKXTNHTXXNPPPNXPPXXXP---NP--HQPXXPXXXPPGARGXXPXLGGGXXGPPXXXX 692
P +N T +PP + P P NP + P PP +R L PP
Sbjct: 257 PPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPP---- 312
Query: 693 XFXGXXPPPPP 725
PPPPP
Sbjct: 313 ------PPPPP 317
>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 933
Score = 26.6 bits (56), Expect = 6.1
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +2
Query: 113 KSFNLVFGWFWLVGRLVGFTFNRGPTFFQPKKNGPKRVNISGFWYLAPSKWARSPGTG*R 292
+S N +F + L ++V F GP +F PK N P ++ L ++ R+
Sbjct: 515 QSTNSLFNLYQLEKKIVAF----GPRYFNPKNNTPTNYFLA---LLMCGEFERAISFLHT 567
Query: 293 NSPKSSTNFSV 325
N P +T+F+V
Sbjct: 568 NYPVEATHFAV 578
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 192 NVGPRLNVNPTSLPTNQNQPNTKLKLFSF 106
N+GP +++N N+N N +L+ FSF
Sbjct: 506 NLGPTVSLNTLVDEWNKNSDNPRLEKFSF 534
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,787,936
Number of Sequences: 5004
Number of extensions: 79956
Number of successful extensions: 310
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 579724962
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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