Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_I08
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    34   0.022
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    27   4.5  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   4.5  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    26   5.9  

>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 34.3 bits (75), Expect = 0.022
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = +2

Query: 29  GNSLRFE*LFVKLADESLLREIFHAFYKIKPCSIMSNYPDIVNKIGKDS 175
           G+ + F  LF+K    ++ + ++  F  +   +++ NYPDIV K+G+ S
Sbjct: 393 GSDIHFRYLFLKTVFWTVRKNLYQGFITVSR-TLVPNYPDIVQKLGQTS 440


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 53  LFVKLADESLLREIFHAFYKI 115
           L++    E ++REI HAFYK+
Sbjct: 552 LYIPPHREEIVREIHHAFYKV 572


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 167 KDSSRAACKKCGYAGHLTFQC 229
           +D     C+ CG  GH  F C
Sbjct: 304 RDDENQVCQNCGNVGHRRFDC 324


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 182 AACKKCGYAGHLTFQCR 232
           A C KCG  GH+   CR
Sbjct: 83  AECYKCGRVGHIARDCR 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,331
Number of Sequences: 5004
Number of extensions: 36098
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)