Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_I07
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.28 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.65 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.0  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = +1

Query: 745 PPXXXSPPPPGXXAXXXXWGPPFP-XPPPXXXXRPPXPS 858
           PP   +PP P          PP P  PPP     PP PS
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPS 162



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +3

Query: 744 PXXNXXPPXPRXKXXFXXLGPPLPXS-PPXXTPXAP 848
           P  +  PP P          PP+P S PP   P AP
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 748 PXXXSPPPPGXXAXXXXWGPPFPXPPP 828
           P    PPPP         GPP P PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
 Frame = +1

Query: 760 SPPPPGXXAXXXXWGP-PFPXPPPXXXXRPPXP 855
           SPPPP          P P P PPP      P P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 760  SPPPPGXXAXXXXWGPPFPXPPPXXXXRPPXPSGXA 867
            +PPPP          PP P  PP     PP P+  A
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPP-PPLPASSA 1740



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +1

Query: 745  PPXXXSPPPPGXXAXXXXWGPPFPXPPPXXXXRPP 849
            PP    PPPP   A     GPP   PPP      P
Sbjct: 1709 PPPMSVPPPPS--APPMPAGPPSAPPPPLPASSAP 1741


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -2

Query: 867 GXAGXXGGPXXXXGGGXREGGAPXXXXXXXPGGXGG 760
           G  G  GGP    GG    GG P       PGG GG
Sbjct: 236 GPGGFGGGPGGFGGGLGGFGGGPGGFGGG-PGGHGG 270


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/39 (30%), Positives = 13/39 (33%)
 Frame = +1

Query: 745 PPXXXSPPPPGXXAXXXXWGPPFPXPPPXXXXRPPXPSG 861
           PP      PP          P  P  PP     PP P+G
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAG 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,723
Number of Sequences: 5004
Number of extensions: 40090
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)