Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_I03
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 31 0.16
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 29 0.66
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 29 1.2
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 28 1.5
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 28 2.0
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 3.5
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 3.5
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 27 3.5
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 27 4.7
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 27 4.7
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 27 4.7
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 26 6.2
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 6.2
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb... 26 6.2
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 31.5 bits (68), Expect = 0.16
Identities = 15/67 (22%), Positives = 32/67 (47%)
Frame = +1
Query: 376 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 555
KA + LE+ ++ E + EE+ H + T+ + + + +QE ++ K +
Sbjct: 353 KACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEKIIQEKSRVDKMIDEYR 412
Query: 556 QETNEKT 576
Q+ +E T
Sbjct: 413 QKLSEST 419
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 29.5 bits (63), Expect = 0.66
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +1
Query: 358 LGDANGKAKEALEQSRQNIERTAEELRKAHPD---VEKNATALREKLQAAVQNTVQESQK 528
+ +A KA+++LEQ+ + E L K H + E+ + +EKL A ++ + S++
Sbjct: 52 INEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEE 111
Query: 529 L 531
L
Sbjct: 112 L 112
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 429 LGRALDVLPRLFQSLLGLAVRVSERSPGDSW 337
+G + L RLF SL GL ++ SPG+ W
Sbjct: 410 VGTVIQGLSRLFSSLYGLRFVPADISPGEVW 440
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/74 (25%), Positives = 40/74 (54%)
Frame = +1
Query: 376 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 555
K+++ LE S Q +E E + P+V++ +EK ++ V+ +E +K+++ + S+
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKE-EKISRNLRSSS 189
Query: 556 QETNEKTGAQDQGP 597
+ + T Q Q P
Sbjct: 190 RSISPVT-EQPQSP 202
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 538 KVSSNVQETNEKTGAQDQGPPTTTFAKEHP 627
++ + +TN G G PTT + +EHP
Sbjct: 571 RIYQDPDDTNSHIGCDPPGYPTTKYIEEHP 600
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 379 AKEALEQSRQNIERTAEELRK-AHPDVEKNATALRE 483
A E +++ +IER+A K A + E+ ATALRE
Sbjct: 157 ASERAREAQSSIERSASLREKQAREEAERAATALRE 192
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 514 QESQKLAKKVSSNVQETNEKTGAQDQGPPTTT 609
+ S ++ K ++ V+ NEK+ +Q+ PP +T
Sbjct: 131 ETSSQIGKDNAAPVENVNEKSTSQETAPPVST 162
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.1 bits (57), Expect = 3.5
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +1
Query: 376 KAKEALE---QSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVS 546
K KE +E Q ++ +ER E LRK + EK A + ++S +K+
Sbjct: 128 KEKEEMEGSLQGKEKLEREVENLRKELDKYKDLVETEAEKRAAITKEECEKSWLEQQKLY 187
Query: 547 SNVQETNEKT 576
++++ N T
Sbjct: 188 KDMEQENAST 197
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 262 KDAQDFSKGLEGRLRVPCCNSSTPSPRV 345
+D DF+ LEG + +P +S T +P V
Sbjct: 342 QDQSDFNLELEGTIAIPLTSSKTETPFV 369
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.6 bits (56), Expect = 4.7
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Frame = +1
Query: 364 DANGKAKEALEQSRQNIERT--------AEELRKA-HPDVE----KNATALREKLQAAVQ 504
D+ KAK LEQ+R +ERT A EL+ A P++E K L EK + V
Sbjct: 403 DSIKKAKTELEQARIELERTQREGNYARASELQYAIIPELERSVPKEEKTLEEKKPSMVH 462
Query: 505 NTVQESQKLAKKVS--SNVQETNEKTGAQDQ 591
++V S +A VS + + TN G +D+
Sbjct: 463 DSV-TSDDIAVVVSRATGIPTTNLMRGERDK 492
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 272 RTSAKAWKDGSEFRAATAQR-LRQESPGERSETRTARPR 385
RTS W GS +AQR + S S R A+P+
Sbjct: 491 RTSGNRWSSGSSHSKKSAQRSVSMSSLNNTSNGRVAKPK 529
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 406 QNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKT 576
+N+ +KA DV + A + K +QN + +QK +VS E EKT
Sbjct: 232 ENLGELTRNWQKAMDDVTEKF-ASKSKEYEDLQNELDATQKRLSRVSDLEHEVKEKT 287
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +1
Query: 376 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQ 525
KAKE ++ R +RTA E+RK +E+ R + A Q + Q
Sbjct: 164 KAKEEDKRIRLLAKRTAWEIRKKWKVIEREVRRRRAERAAEAQRVAGKEQ 213
>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 391 LEQSRQNIERTAEELRKAHPDVEK 462
+EQ+R E T E++++A P++EK
Sbjct: 126 IEQARPTEEITIEDMKQAVPEIEK 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,399
Number of Sequences: 5004
Number of extensions: 42212
Number of successful extensions: 191
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -