Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_I02
         (1046 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.8  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   7.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = +2

Query: 290 GGXXXPPPPPXTGXXXAPARXGXPAPPXPP 379
           GG   PPPPP        A  G P PP PP
Sbjct: 759 GGPPPPPPPPGV------AGAGPPPPPPPP 782



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +2

Query: 293 GXXXPPPPPXTGXXXAPARXGXPAPPXPPXPP 388
           G   PPPPP       P   G   PP PP PP
Sbjct: 759 GGPPPPPPP-------PGVAGAGPPPPPPPPP 783



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 290 GGXXXPPPPPXTGXXXAPARXGXPAPPXPPXP 385
           G    PPPPP        +R   PAP   P P
Sbjct: 772 GAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 305 PPPPPXTGXXXAPARXGXPAPPXPP 379
           PPPPP       PA    P PP  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAP 756



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 305 PPPPPXTGXXXAPARXGXPAPPXPP 379
           P P P      AP   G P PP PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPP 768


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
 Frame = +2

Query: 308  PPPPXTGXXXAPARXGXPA-PPXPPXPP 388
            PPPP       P+    PA PP  P PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
 Frame = +2

Query: 305  PPPPPXT---GXXXAPARXGXPAPPXPPXP 385
            PPPPP +        P   G P+ P PP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 791 APXPPPPXPXPXP 829
           AP PPPP P P P
Sbjct: 2   APAPPPPPPAPAP 14


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
 Frame = +2

Query: 293 GXXXPP--PPPXTGXXXAPARXGXPAPPXPPXPP 388
           G   PP  P P  G    PA  G P    PP  P
Sbjct: 528 GMALPPGMPAPFPGYPAVPAMPGIPGATAPPGAP 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,162,005
Number of Sequences: 5004
Number of extensions: 12479
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 549226150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)