Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_H24
         (963 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.3  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.7  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.9  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   6.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   9.1  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 22/62 (35%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
 Frame = -2

Query: 899 GGRAXREGXPPXXGGGGGXXS*VGGEXRGXPRXG*GG-GXXXXXXXGGXGKLWXXGGXXX 723
           GG     G PP   GG G     GGE  G    G GG G       GG G      G   
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGE--GHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFG 248

Query: 722 GG 717
           GG
Sbjct: 249 GG 250


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +2

Query: 245 DYNPNG-NGYXPIDNGAYYVDPPQG---RPYFKPTPFPG 349
           DYN N  N Y PI N  Y+++   G    PYF     PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 382 FXRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRXV 269
           F    ++P  STR+R  + +R   G +H+IC   D  +
Sbjct: 757 FRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/37 (37%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
 Frame = +3

Query: 837 TXLPTPAPXXXGXXLSRGPPXXXPP-----AXSPPPP 932
           T  P P P      +  GPP   PP     A  PPPP
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 24/68 (35%), Positives = 24/68 (35%)
 Frame = -2

Query: 899 GGRAXREGXPPXXGGGGGXXS*VGGEXRGXPRXG*GGGXXXXXXXGGXGKLWXXGGXXXG 720
           GGR    G      GG G      G  RG  R G  GG       GG G      G   G
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGG------RGGRGGARGGRGGSSG 62

Query: 719 GRXKGRKG 696
           GR  G KG
Sbjct: 63  GRG-GAKG 69


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +3

Query: 825  PTHSTXLPTPAPXXXGXXLSRGPPXXXPPAXSPPPP 932
            P H    P   P          P    PP   PPPP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,816
Number of Sequences: 5004
Number of extensions: 50334
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)