Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_H22
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    30   0.51 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    28   2.0  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    27   3.6  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    26   6.2  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   8.2  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   8.2  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   8.2  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    26   8.2  

>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 170 PSQHLKACQDMVDIPTKSKVTLDCIPARDRMECLNYVQQRQADFVPVD 313
           P   L+A Q+++D    S++    I   + ++   YVQ+++ DF PVD
Sbjct: 230 PGNKLEAIQNVIDSLHISRIE---IRTENSIDISQYVQKKEVDFFPVD 274


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 294 PISFQLTPKTCTWPPKYPIRTSSFSRSTEPMKN 392
           P+  Q  P+   +PP YPI   S+   T P  N
Sbjct: 736 PVVSQQQPQPYAFPPMYPIPYVSYGYGTMPYNN 768


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 427 HP*GFTDKQSGPAERLEVLSYWS*QKRGIPDPSNNADEACSFPQNETXTAFRRKENELK 603
           HP     K+  P +  + LS  +  K G+P P+N+         NE   + + KE E+K
Sbjct: 565 HPSATETKEETPKKTSDSLSLLTLLKSGLPTPANDLQNKSQ--NNERKASSQVKELEVK 621


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 647 WSPGSENXLGLERPIQQAMLYVRTSRE 727
           W+ G +   G  R +QQAM+Y R++ +
Sbjct: 159 WTIGYDERYGNTRRMQQAMMYYRSNED 185


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 294 PISFQLTPKTCTWPPKYPIRTSSFSRSTEPMKNRMRLSVTKQ 419
           P  + LT  TC      PI+++   ++ E + N  ++S   Q
Sbjct: 266 PSGYPLTSSTCVSSISQPIQSTDCQKAQENLSNNKQMSSNDQ 307


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 530 LLEGSGIPRFC*LQYDRTSSLSAGPDCLSV 441
           ++   GIP FC +QY     + AG   LSV
Sbjct: 220 VISNHGIPLFCSIQYQGKYIMCAGGSFLSV 249


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 333 PPKYPIRTSSFSRSTEPMKN 392
           PPK P+R  S  RS+ P++N
Sbjct: 306 PPKPPLRKVSTQRSSSPIEN 325


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 591 FLSAKCCXRFILGKTARFISIVRGIWYPTFLLTPV*QDFKPFSWSRLFIGKSL 433
           FLS   C   I   T  F  I+ G+ Y    +  + +D KP   S +F+ KSL
Sbjct: 380 FLSFPLCKEQIQLHTDLFRMIINGVMYVHEGVNLIHRDIKP---SNIFLAKSL 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,618,779
Number of Sequences: 5004
Number of extensions: 75454
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)