Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_H21
         (1143 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.69 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.7  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    27   3.7  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 20/65 (30%), Positives = 23/65 (35%)
 Frame = -2

Query: 662 AXPLEXXVXPPPXXPPPXPSXPRWXXLXRXPXPXXVPTXXAPSSSXXPPXSXPXAFVXTX 483
           A P       PP   PP PS P        P P   P    P  S  PP + P A V + 
Sbjct: 129 APPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP----PIPSSLPPPAQPAAPVKSP 184

Query: 482 XRXPA 468
              P+
Sbjct: 185 PSAPS 189


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 20/75 (26%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
 Frame = -2

Query: 743 PXPXPPTLP---PXXXXXXGXXXXXXXXSXAXPLEXXVXPPPXXPPPXPSXPRWXXLXRX 573
           P P PP+LP   P                 A PL       P  P   P+ P        
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA 475

Query: 572 PXPXXVPTXXAPSSS 528
           P P   P   AP +S
Sbjct: 476 PPPAPAPAPAAPVAS 490


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 22/85 (25%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
 Frame = -2

Query: 743  PXPXPPTLPPXXXXXXGXXXXXXXXSXAXPLEXXVXPPPXXPPP--XPSXPR-WXXLXRX 573
            P P P   PP               S   P+       P  PPP   P  P+    +   
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV 1210

Query: 572  PXPXXVPTXXAPSSSXXPPXSXPXA 498
            P P   P    PS+   PP   P A
Sbjct: 1211 PPPSTAPPVPTPSAG-LPPVPVPTA 1234


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/34 (38%), Positives = 14/34 (41%)
 Frame = -2

Query: 635  PPPXXPPPXPSXPRWXXLXRXPXPXXVPTXXAPS 534
            PPP   PP PS P          P  +P   APS
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPS 1742


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 150

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/61 (24%), Positives = 21/61 (34%)
 Frame = -2

Query: 1085 YSYXFXLXAPAXXXPAPXLXFSXSXXXXXLPRSXXXRPPLHXPPXCPXXXXXSHXXXPXX 906
            ++  + L AP      P   ++ +      P S   RPP   PP  P     S    P  
Sbjct: 70   FTNFYPLTAPPPYTAEPEARYNSTIHNPMPPMSQAYRPPPTEPPTVPAYETSSEFPPPAY 129

Query: 905  P 903
            P
Sbjct: 130  P 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,470,532
Number of Sequences: 5004
Number of extensions: 15551
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 609607692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)