Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_H18
(947 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 37 0.004
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 34 0.025
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 34 0.034
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 28 0.14
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.24
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.41
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 0.60
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 29 0.96
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.2
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.1 bits (82), Expect = 0.004
Identities = 13/19 (68%), Positives = 13/19 (68%)
Frame = +2
Query: 878 PPXPPPPPXXAXXXPPPPP 934
PP PPPPP A PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779
Score = 35.5 bits (78), Expect = 0.011
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +2
Query: 872 PPPPXPPPPPXXAXXXPPPPP 934
PPPP PPP A PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781
Score = 31.9 bits (69), Expect = 0.14
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 875 PPPXPPPPPXXAXXXPPPPPXRXG 946
P P P PPP PPPPP G
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPG 769
Score = 29.1 bits (62), Expect = 0.96
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 851 PLXCGXXPPPPXPPPPPXXA 910
P G PPPP PPPP A
Sbjct: 768 PGVAGAGPPPPPPPPPAVSA 787
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 34.3 bits (75), Expect = 0.025
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +2
Query: 875 PPPXPPPPPXXAXXXPPPPP 934
PPP PPPP PPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPP 28
Score = 33.1 bits (72), Expect = 0.059
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = +2
Query: 872 PP--PPXPPPPPXXAXXXPPPPPXRXG 946
PP PP PPPPP PPPP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 31.9 bits (69), Expect = 0.14
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 863 GXXPPPPXPPPPPXXAXXXPPPPP 934
G PPPP PP + PPPPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.9 bits (74), Expect = 0.034
Identities = 25/80 (31%), Positives = 27/80 (33%), Gaps = 12/80 (15%)
Frame = +2
Query: 737 SXPPXPPQKKXGLXFSLXXKKNXXXXXXXXSRGGGKTXPLXCGXX----PPPPXPP---- 892
S PP PP +L K SR P+ G PPPP PP
Sbjct: 288 SKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNA 347
Query: 893 ----PPPXXAXXXPPPPPXR 940
P P PPPPP R
Sbjct: 348 AGSIPLPPQGRSAPPPPPPR 367
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.9 bits (59), Expect(2) = 0.14
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 863 GXXPPPPXPPPP 898
G PPPP PPPP
Sbjct: 303 GGLPPPPPPPPP 314
Score = 22.6 bits (46), Expect(2) = 0.14
Identities = 9/25 (36%), Positives = 9/25 (36%)
Frame = +2
Query: 872 PPPPXPPPPPXXAXXXPPPPPXRXG 946
PPPP PP P P G
Sbjct: 308 PPPPPPPSNDFWKDSNEPAPADNKG 332
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.24
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 872 PPPPXPPPPPXXAXXXPPPP 931
PPPP PP P PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734
Score = 29.1 bits (62), Expect = 0.96
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 872 PPPPXPPPPPXXAXXXPPPPP 934
PPPP PPP A P PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPP 1728
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 881 PXPPPPPXXAXXXPPPPPXRXG 946
P PPPPP P PP G
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAG 1726
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 872 PPPPXPPPPPXXAXXXPPPPP 934
PPP PP P PPP P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLP 1736
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.3 bits (65), Expect = 0.41
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +2
Query: 872 PPPPXPPPPPXXAXXXPPPP 931
P PP PPP P A P PP
Sbjct: 3 PAPPPPPPAPAPAAAAPAPP 22
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect(2) = 0.60
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 872 PPPPXPPPP 898
PPPP PPPP
Sbjct: 189 PPPPPPPPP 197
Score = 26.2 bits (55), Expect = 6.7
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 875 PPPXPPPPP 901
PPP PPPPP
Sbjct: 189 PPPPPPPPP 197
Score = 24.6 bits (51), Expect(2) = 0.60
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +2
Query: 872 PPPPXPPPPPXXAXXXPPPPPXR 940
PPPP P PP P P R
Sbjct: 239 PPPPPPTLPPQSTNTSQLPMPSR 261
Score = 23.4 bits (48), Expect(2) = 0.60
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +2
Query: 851 PLXCGXXPPPPXPPPP 898
P P PP PPPP
Sbjct: 229 PKQADPLPAPPPPPPP 244
Score = 21.8 bits (44), Expect(2) = 0.60
Identities = 8/20 (40%), Positives = 8/20 (40%)
Frame = +2
Query: 875 PPPXPPPPPXXAXXXPPPPP 934
PP P PPPPP
Sbjct: 224 PPTYTPKQADPLPAPPPPPP 243
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 29.1 bits (62), Expect = 0.96
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +2
Query: 872 PPPPXPPPPPXXAXXXPPPPPXR 940
P PP P P P PPPPP R
Sbjct: 729 PAPPTPAPTP-AVKHHPPPPPVR 750
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 872 PPPPXPPPPPXXAXXXPPPPP 934
PPP PP P + PP PP
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPP 1212
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 6.7
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 872 PPPPXPPPP 898
PPPP PPPP
Sbjct: 945 PPPPPPPPP 953
Score = 26.2 bits (55), Expect = 6.7
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 875 PPPXPPPPP 901
PPP PPPPP
Sbjct: 945 PPPPPPPPP 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,523
Number of Sequences: 5004
Number of extensions: 33915
Number of successful extensions: 296
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -