Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_H17
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.059
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 0.059
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +3

Query: 669 RPXXXPPXXPPPXKKXXKKPGXXXPXGXNXXPXPXSPPGXPP 794
           +P    P   P   +  + P    P   +  P P  PPG PP
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 26.6 bits (56), Expect = 0.31
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 247 PPXPPXRXPPXGGXGAPXSXXP 182
           PP P    PP G  GAP S  P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.8 bits (54), Expect = 0.55
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +1

Query: 748 GXTPXPGXXPPRGXPXXXPPXPXP 819
           G  P P   PP G P   PP   P
Sbjct: 37  GSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = +2

Query: 812 PXPRXPPHRXXXXPLRXXPXXKKXPPXPKIP 904
           P P+  PH+    P R  P      P P  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 249 APQXXPXGXPPXGGXGPP 196
           +PQ    G PP    GPP
Sbjct: 30  SPQAPQRGSPPNPSQGPP 47


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 802 PPXPXPPVXPP 834
           PP P PP  PP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.146    0.488 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,268
Number of Sequences: 438
Number of extensions: 5639
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)