Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_H15
         (877 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,713...    28   8.5  
08_02_0295 - 15449323-15449376,15449625-15449804,15450558-154506...    28   8.5  
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399...    28   8.5  

>10_03_0021 +
           7129786-7130117,7130227-7130347,7131048-7131136,
           7131375-7131459,7131609-7131771,7132861-7132937,
           7133016-7133160,7133236-7133537,7133615-7133720,
           7134781-7134935,7135556-7135712,7135799-7135891,
           7136232-7136359,7136439-7136696,7136855-7137145,
           7137235-7137318,7138335-7138468,7138557-7138784,
           7139778-7139958,7140021-7140108,7140268-7140434,
           7140750-7141012,7141117-7141120
          Length = 1216

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 207 ALKWPSRTVRIPKSTISLTTWAHATYHSASATGLMS-GTRKL 329
           A   P+  +RIP S I    W+   Y++ S +G M+ GT  L
Sbjct: 498 AFSLPNWILRIPYSFIEAVVWSCVVYYTVSVSGNMTVGTNIL 539


>08_02_0295 -
           15449323-15449376,15449625-15449804,15450558-15450604,
           15450695-15450875,15451348-15451452,15452414-15452473,
           15452957-15453041,15453337-15453353
          Length = 242

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 163 KMLSGDVTDSCHNKQQYNKTFQLSTFSFTMPRT 65
           +M  G +    H+K  +NK  +LST+S  +  T
Sbjct: 48  RMSKGQMVHEIHSKNSWNKEMRLSTYSTALDST 80


>01_07_0111 - 41137822-41138973,41139453-41139540,41139850-41139969,
            41140165-41140211,41140796-41141029,41141305-41141505,
            41141506-41143407,41144140-41145303,41145574-41145879
          Length = 1737

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 132  QLSVTSPDNIFQRENARKVNIRFCIALKW 218
            +L V   +N+ + E+ARK N+R  + L+W
Sbjct: 954  ELEVRHLENVERLEDARKANLRDMVELRW 982


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,280,469
Number of Sequences: 37544
Number of extensions: 341079
Number of successful extensions: 730
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)