Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_H14
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr 2...    28   2.0  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    27   2.7  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    26   8.1  

>SPBC4C3.03 |||homoserine kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 338

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
 Frame = +1

Query: 535 SIGSAPLNEHHKNRTLXSEVAKPDRTIKIPGVSPLEXPSCALLVPEPCP-LTGI----PG 699
           ++G  P+N H     +  +V +P R   IPG+  +     A L P+  P L GI     G
Sbjct: 237 ALGQTPINPHLVYEVMKDKVHQPYRASLIPGLQNI----LATLNPDTQPGLCGICLSGAG 292

Query: 700 PAFLPFGKRGXFLIAHA 750
           P  L         IAHA
Sbjct: 293 PTVLALATGNFDEIAHA 309


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 729 ATLPEGEKGRTRYSGKRAGF 670
           A++ EG +GR ++S K+AGF
Sbjct: 650 ASVMEGREGRDKFSSKKAGF 669


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 625 GVSPLEXPSCALLVPEPCPLT 687
           GV  LE  S +++VPE CP T
Sbjct: 398 GVFELENMSASMVVPEECPET 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,334
Number of Sequences: 5004
Number of extensions: 55287
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)