Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_H14
         (875 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128376-1|BAC87407.1|  322|Homo sapiens protein ( Homo sapiens ...    32   2.4  
AJ549093-1|CAD79343.1|  396|Homo sapiens FUS/BBF2H7 protein prot...    25   5.5  

>AK128376-1|BAC87407.1|  322|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46519 fis, clone THYMU3033649, highly  similar
           to T-cell surface glycoprotein CD3 zeta chain precursor.
           ).
          Length = 322

 Score = 32.3 bits (70), Expect = 2.4
 Identities = 21/47 (44%), Positives = 24/47 (51%)
 Frame = -3

Query: 771 RNWRYXPGVGYEEGATLPEGEKGRTRYSGKRAGFGNQESAXGXFQGG 631
           + WR  P  G EEG  L EG  GR   +G RAG G +  A G   GG
Sbjct: 189 KGWRRAPEEGLEEG--LEEGSGGR---AGGRAGGGLRRRAGGRAGGG 230


>AJ549093-1|CAD79343.1|  396|Homo sapiens FUS/BBF2H7 protein
           protein.
          Length = 396

 Score = 25.0 bits (52), Expect(2) = 5.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 552 GGGAYGKTPATRPFYGSWPFA 490
           GGG+ G  P ++PF GS PF+
Sbjct: 85  GGGSGGSQPHSKPFPGS-PFS 104



 Score = 24.6 bits (51), Expect(2) = 5.5
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -3

Query: 750 GVGYEEGATLPEGEKGRTRYSGKRAGFGNQESAXGXFQGGN 628
           G G   G    + +   +   G   G+GNQ+ + G   GG+
Sbjct: 51  GGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGS 91


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,911,572
Number of Sequences: 237096
Number of extensions: 2425173
Number of successful extensions: 8255
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8245
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)