Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_H13
         (1242 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       31   0.016
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.45 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.2  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   7.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   7.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.5 bits (68), Expect = 0.016
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = -1

Query: 213 PRXSXXPPXXXPPPXPXCPSPXRXPPPSXXPPPPXPPPPPXXXXXSRXFPPP 58
           P      P   P   P  P     P PS  PPP  PP  P     S+    P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 26.6 bits (56), Expect = 0.45
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = -1

Query: 240 PAXPPXPPPPRXSXXPPXXXPPPXPXCPSP 151
           P  P    PP  S  PP   PP  P   +P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.4 bits (53), Expect = 1.0
 Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
 Frame = -1

Query: 249 PXXPAXPPXPPPPRXSXXPPXXXPPPXPXCPSPXRXP--PPSXXP 121
           P   A  P P P +    P    PP     P P   P  PPS  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.4 bits (53), Expect = 1.0
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = -1

Query: 231 PPXPPPPRXSXXPPXXXPPPXPXCPSPXRXPPPSXXPPPPXP 106
           P   P P  S   P    PP P    P   PP +  PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGA--PPSQNP 60



 Score = 25.0 bits (52), Expect = 1.4
 Identities = 14/45 (31%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
 Frame = -2

Query: 581 PYXXXPXXXPRPRXVGXLYXXXDXPXXSSXPPPXXPP-PPPXXXP 450
           P    P   P P            P  S  PPP  PP  PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/36 (30%), Positives = 12/36 (33%)
 Frame = -1

Query: 204 SXXPPXXXPPPXPXCPSPXRXPPPSXXPPPPXPPPP 97
           S  P    P P P      + P     P P   PPP
Sbjct: 13  SQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/32 (31%), Positives = 11/32 (34%)
 Frame = -2

Query: 938 PPPRPXXXRPRWXPPXPPXVXXPPPXPPXPAP 843
           P P      P+   P  P    PP  PP   P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -1

Query: 132 SXXPPPPXPPPPP 94
           S  PP P PPPPP
Sbjct: 335 SDTPPKPAPPPPP 347



 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 500 SSXPPPXXPPPPP 462
           S  PP   PPPPP
Sbjct: 335 SDTPPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 138 PPSXXPPPPXP 106
           PP   PPPP P
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 685 PXXPPPPPPP 656
           P  P PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 690 PXPXXPPPPP 661
           P P  PPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 685 PXXPPPPPPP 656
           P   PPPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 491 PPPXXPPPPP 462
           P P  PPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 123 PPPPXPPPPP 94
           P P  PPPPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 752 PLSXPPPPPP 723
           P   PPPPPP
Sbjct: 339 PKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 676  PPPPPPP 656
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 676  PPPPPPP 656
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 123  PPPPXPPP 100
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 120  PPPXPPPP 97
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 117  PPXPPPPP 94
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +3

Query: 585 PRNPREXGLXXGGGXGGXXAXRXXGGGGGG 674
           P +    G+  G   G        GGGGGG
Sbjct: 22  PGSSSAGGVVTGASGGSIVVGANNGGGGGG 51



 Score = 22.6 bits (46), Expect = 7.3
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = +2

Query: 113 GGGGXXXGGGXRXGEGXXGXGGGXXXGGXXEXRGGGGXGGXAG 241
           GG G    GG        G  GG    G     GGGG G  +G
Sbjct: 20  GGPGSSSAGGV-----VTGASGGSIVVGANNGGGGGGLGIASG 57



 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 621 GGXGGXXAXRXXGGGGGGG 677
           G  GG        GGGGGG
Sbjct: 33  GASGGSIVVGANNGGGGGG 51



 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 433 GGGXXXGXXXGGGGGXXG 486
           GG    G   GGGGG  G
Sbjct: 36  GGSIVVGANNGGGGGGLG 53


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 147  RXPPPSXXPPPPXPPP 100
            R  P S  P PP PPP
Sbjct: 1849 RNIPVSGSPEPPPPPP 1864


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
 Frame = -2

Query: 632 PAPPPXXKPLFXGVPGGPYXXXPXXXPRPRXVGXL--YXXXDXPXXSSXPPPXXP 474
           P P P     F   P GP+       PR R +G L  +     P      PP  P
Sbjct: 117 PVPVPIYCGNFPPRPMGPWISIQEQIPRFRHIGPLTPFPRFIPPNAYRFRPPLNP 171


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
 Frame = -2

Query: 632 PAPPPXXKPLFXGVPGGPYXXXPXXXPRPRXVGXL--YXXXDXPXXSSXPPPXXP 474
           P P P     F   P GP+       PR R +G L  +     P      PP  P
Sbjct: 358 PVPVPIYCGNFPPRPMGPWISIQEQIPRFRHIGPLTPFPRFIPPNAYRFRPPLNP 412


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -1

Query: 138 PPSXXPPPPXPPPPP 94
           PPS  P  P P P P
Sbjct: 437 PPSSNPVSPVPSPDP 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.157    0.561 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 284,367
Number of Sequences: 438
Number of extensions: 17234
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42382239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)