Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_H12
         (959 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    32   0.10 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.97 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.97 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.7  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   3.9  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 30/116 (25%), Positives = 31/116 (26%), Gaps = 5/116 (4%)
 Frame = +2

Query: 341 GXXXPXPLXPQQPXXDTPPXXXRRXP---RPPXXRGXXGGGXXXXXXXPPXHXAXGGGRR 511
           G   P P    +P    PP      P    PP       G        PP H   G    
Sbjct: 217 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG---EHMPPPPMHHEPG--EH 271

Query: 512 XGXPPPXXPP--HTPPXPXAXXPGXPXLXPPXTAXXXXXXHTPPRXTPXXXHRDPP 673
              PP    P  H PP P    PG     PP           PP       H  PP
Sbjct: 272 MPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 327



 Score = 32.3 bits (70), Expect = 0.10
 Identities = 30/116 (25%), Positives = 31/116 (26%), Gaps = 5/116 (4%)
 Frame = +2

Query: 341 GXXXPXPLXPQQPXXDTPPXXXRRXP---RPPXXRGXXGGGXXXXXXXPPXHXAXGGGRR 511
           G   P P    +P    PP      P    PP       G        PP H   G    
Sbjct: 230 GEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPG---EHMPPPPMHHEPG--EH 284

Query: 512 XGXPPPXXPP--HTPPXPXAXXPGXPXLXPPXTAXXXXXXHTPPRXTPXXXHRDPP 673
              PP    P  H PP P    PG     PP           PP       H  PP
Sbjct: 285 MPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 340



 Score = 31.9 bits (69), Expect = 0.14
 Identities = 30/116 (25%), Positives = 31/116 (26%), Gaps = 5/116 (4%)
 Frame = +2

Query: 341 GXXXPXPLXPQQPXXDTPPXXXRRXP---RPPXXRGXXGGGXXXXXXXPPXHXAXGGGRR 511
           G   P P    +P    PP      P    PP       G        PP H   G    
Sbjct: 204 GEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPG---EHMPPPPMHHEPG--EH 258

Query: 512 XGXPPPXXPP--HTPPXPXAXXPGXPXLXPPXTAXXXXXXHTPPRXTPXXXHRDPP 673
              PP    P  H PP P    PG     PP           PP       H  PP
Sbjct: 259 MPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 314


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +3

Query: 474  PXPXTXPRAAXXXXXXPPX-SXPPTXPPPPXPXXPA 578
            P P   P +       PP  + PP+ PPPP P   A
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSA 1740



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = +3

Query: 474  PXPXTXPRAAXXXXXXPPXSXPPTXPPPPXPXXP 575
            P     P+ +      PP S PP    PP P  P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.97
 Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
 Frame = +3

Query: 474 PXPXTXPRAAXXXXXXPPXSXPP----TXPPPPXPXXPA 578
           P P   P  A      PP   PP      PPPP P  PA
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +1

Query: 460 PXXXXPXXPXXXGRRAAXGXPPPXPPPP 543
           P    P  P      A  G PPP PPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 20/63 (31%), Positives = 21/63 (33%)
 Frame = +2

Query: 353 PXPLXPQQPXXDTPPXXXRRXPRPPXXRGXXGGGXXXXXXXPPXHXAXGGGRRXGXPPPX 532
           P P+ P  P    PP        PP   G  G G       PP   A  GG R   P P 
Sbjct: 748 PIPVPPPAPIMGGPPP-------PPPPPGVAGAGPPPPPPPPPAVSA--GGSRYYAPAPQ 798

Query: 533 XPP 541
             P
Sbjct: 799 AEP 801


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 524 PPXXPPHTPPXPXAXXPGXPXLXPP 598
           PP  PP  PP P    P  P   PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 522 PPXSXPPTXPPPPXP 566
           PP   PP+ PPPP P
Sbjct: 15  PPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 514 GXPPPXPPPPHXPXP 558
           G PPP PPPP    P
Sbjct: 7   GNPPPPPPPPGFEPP 21


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
 Frame = +2

Query: 524 PPXXPPHTPPX--PXAXXPGXPXLXPPXTAXXXXXXHTPPR 640
           PP  P   PP   P    P  P + PP         ++PPR
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPR 273


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/53 (30%), Positives = 18/53 (33%)
 Frame = +2

Query: 515  GXPPPXXPPHTPPXPXAXXPGXPXLXPPXTAXXXXXXHTPPRXTPXXXHRDPP 673
            G PP   P   PP P     G P + PP TA             P    + PP
Sbjct: 1187 GVPPVPPPSEAPPVPKPSV-GVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 18/73 (24%), Positives = 21/73 (28%), Gaps = 1/73 (1%)
 Frame = +2

Query: 503  GRRXGXPPPXXPPH-TPPXPXAXXPGXPXLXPPXTAXXXXXXHTPPRXTPXXXHRDPPXX 679
            GR+   P P  PP   PP P +     P   PP           P   +P       P  
Sbjct: 955  GRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPV 1014

Query: 680  XXXSXXXXPXXXP 718
               S    P   P
Sbjct: 1015 PKLSSKAPPVPLP 1027



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/31 (35%), Positives = 11/31 (35%)
 Frame = +3

Query: 474  PXPXTXPRAAXXXXXXPPXSXPPTXPPPPXP 566
            P P   P         PP   P T PP P P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 496 GRRAAXGXPPPXPPPP 543
           G  A  G PPP PPPP
Sbjct: 298 GDSANGGLPPPPPPPP 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.148    0.515 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,384,346
Number of Sequences: 5004
Number of extensions: 15579
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)