Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP06_F_H10
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 219 6e-58
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 219 6e-58
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 29 0.87
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 29 1.1
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 2.7
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 3.5
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 3.5
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 219 bits (534), Expect = 6e-58
Identities = 102/196 (52%), Positives = 130/196 (66%)
Frame = +2
Query: 107 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 286
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60
Query: 287 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 466
TCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 61 TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120
Query: 467 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMXGAVDGGLNVPHSIXRF 646
E +++GP F+ +LDVGL RT+TG+RVFGAM GA DGGL +PHS RF
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRF 180
Query: 647 PGYDAESKXFNAEVHR 694
PG+D E++ + E R
Sbjct: 181 PGFDIETEELDDETLR 196
Score = 29.5 bits (63), Expect = 0.66
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 699 HIFGLHVAEYMXSLXXDDEXXFXR 770
+I+G HVAEYM L DDE + +
Sbjct: 198 YIYGGHVAEYMEMLIDDDEERYQK 221
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 219 bits (534), Expect = 6e-58
Identities = 102/196 (52%), Positives = 130/196 (66%)
Frame = +2
Query: 107 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 286
M F+K VK+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ V
Sbjct: 1 MPFIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFV 60
Query: 287 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXX 466
TCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 61 TCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYE 120
Query: 467 XXXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMXGAVDGGLNVPHSIXRF 646
E +++GP F+ +LDVGL RT+TG+RVFGAM GA DGGL +PHS RF
Sbjct: 121 GVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRF 180
Query: 647 PGYDAESKXFNAEVHR 694
PG+D E++ + E R
Sbjct: 181 PGFDIETEELDDETLR 196
Score = 29.5 bits (63), Expect = 0.66
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 699 HIFGLHVAEYMXSLXXDDEXXFXR 770
+I+G HVAEYM L DDE + +
Sbjct: 198 YIYGGHVAEYMEMLIDDDEERYQK 221
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 29.1 bits (62), Expect = 0.87
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 42 DLPFFLLGVPSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGV 176
DLPF+ +G S LR +IW SL+ T G SR +
Sbjct: 801 DLPFYCVGFKSATPEYTLRTRIWASLRTQTLYRTINGFSNYSRAI 845
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 42 DLPFFLLGVPSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGV 176
DLPF+ +G S LR +IW SL+ T+ G SR +
Sbjct: 897 DLPFYCIGFKSTAPEYTLRTRIWASLRSQTLYRTASGMMNYSRAL 941
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 42 DLPFFLLGVPSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGV 176
DLPF+ +G S LR +IW SL+ T G SR +
Sbjct: 983 DLPFYCIGFKSAMPEYTLRTRIWASLRSQTLYRTISGFMNYSRAI 1027
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 42 DLPFFLLGVPSVDATL*LRFKIWDSLKL*RTNNTSRGTK*NSRGV 176
DLPF+ +G + LR +IW SL+ T G SR +
Sbjct: 959 DLPFYCIGFKNATPEYTLRTRIWASLRSQTLYRTVSGFMNYSRAI 1003
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 437 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 345
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,751
Number of Sequences: 5004
Number of extensions: 61315
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -