Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_H09
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   157   1e-39
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   156   3e-39
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   8.2  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  157 bits (382), Expect = 1e-39
 Identities = 72/135 (53%), Positives = 96/135 (71%)
 Frame = +3

Query: 78  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 257
           M  V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 258 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 437
            RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GG
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGG 120

Query: 438 RILTTQGRRDLDRIA 482
           R ++ QG+RDLDRIA
Sbjct: 121 RRISQQGQRDLDRIA 135


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  156 bits (379), Expect = 3e-39
 Identities = 71/135 (52%), Positives = 96/135 (71%)
 Frame = +3

Query: 78  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 257
           M  V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 258 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 437
            RHIY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GG
Sbjct: 61  ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGG 120

Query: 438 RILTTQGRRDLDRIA 482
           R ++ QG+RDLDRIA
Sbjct: 121 RRISQQGQRDLDRIA 135


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 317 TKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQL 207
           ++D+G +L+ N+ +N+  TK+ S   I+       QL
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQL 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,947
Number of Sequences: 5004
Number of extensions: 45696
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)