Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP06_F_H08
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0964 - 7417158-7417517,7417596-7417868,7418400-7418810,741...    34   0.13 
09_06_0182 - 21397221-21397575,21397712-21398076,21398510-213986...    30   2.7  
08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     30   2.7  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.4  

>06_01_0964 -
           7417158-7417517,7417596-7417868,7418400-7418810,
           7419270-7419347
          Length = 373

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 26/85 (30%), Positives = 39/85 (45%)
 Frame = +2

Query: 362 RFSIGSAPLNEHHKNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPTLPLXGYLSAFLPS 541
           +F +   P N+ ++  RS ++ +  T +     +  G SL    +  LP   Y S   P 
Sbjct: 93  QFFLNDLPGNDFNQLFRSLEKIKTSTTM-----YHKGDSLPSYYISGLP-KSYYSRLFPR 146

Query: 542 GSVALSHSSRCXYLSSGVXRSLQAG 616
            SV L HSS C +  S V   L+AG
Sbjct: 147 QSVHLFHSSYCLHWRSQVPEGLEAG 171


>09_06_0182 -
           21397221-21397575,21397712-21398076,21398510-21398685,
           21398802-21399039,21399627-21400118
          Length = 541

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -3

Query: 677 DSYPG*GAAFGLNRGVWCTQPQLGAN-DXHPN*DTYSVSY 561
           + + G G AFG  RG W    Q G N +   N  +YSVSY
Sbjct: 124 EHWAGNGEAFGTGRGEWRLTVQSGHNIEASTNNYSYSVSY 163


>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 472 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 353
           SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 136 NESAN---ARGEAVCVLGALPLPRSLTRCAR 219
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,113,950
Number of Sequences: 37544
Number of extensions: 502811
Number of successful extensions: 1436
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)